9rc4
Crystal structure of VirJ domain 1 from Brucella
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9rc4 |
| deposition_date | 2025-05-27 |
| title | Crystal structure of VirJ domain 1 from Brucella |
| keywords | Brucella, type IV secretion, membrane, phosphatidyl glycerol, TRANSFERASE; TRANSFERASE |
| method | X-RAY DIFFRACTION |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 24.80 Å |
| rg_electron | 24.24 Å |
| i0 | 35295600.00 |
| molecular_weight | 45428.0 kDa |
| excluded_volume | 56730 ų |
| envelope_volume | 67808 ų |
| shell_volume | 24032 ų |
| envelope_diameter | 85.4 Å |
| shell_rg | 30.59 Å |
| envelope_rg | 24.29 Å |
| shape_rg | 24.24 Å |
| total_rg | 24.99 Å |
| total_atoms | 3188 |
| n_residues | 436 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 84.1 Å |
| rg_real | 24.90 Å |
| rg_real_error | 0.50 Å |
| i0_real | 3.5300e+07 |
| i0_real_error | 4.4340e+05 |
| rg_reciprocal | 24.88 Å |
| i0_reciprocal | 35300000.0000 |
| total_estimate | 0.8638 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 1 |
| r_peak_primary | 25.4 Å |
| skewness | 0.440 |
| kurtosis | -0.356 |
| angular_range | — – 0.3200 Å−1 |
| current_alpha | 0.0001 |
| highest_alpha | 11820000.0000 |
| n_real_points | 64 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.787; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.885; Smooth: 0.979 |