The histone fold domain heterodimer of oocyst rupture proteins 1 and 2 from Plasmodium berghei

entry_id	9rif
deposition_date	2025-06-11
title	The histone fold domain heterodimer of oocyst rupture proteins 1 and 2 from Plasmodium berghei
keywords	oocyst rupture protein, histone fold domain, heterodimer, UNKNOWN FUNCTION; UNKNOWN FUNCTION
method	X-RAY DIFFRACTION

rg_guinier	36.09 Å
rg_electron	35.21 Å
i0	243599000.00
molecular_weight	129820.0 kDa
excluded_volume	164310 ų
envelope_volume	211020 ų
shell_volume	49405 ų
envelope_diameter	131.1 Å
shell_rg	42.25 Å
envelope_rg	35.04 Å
shape_rg	35.19 Å
total_rg	35.79 Å
total_atoms	9103
n_residues	1101
n_harmonics	20
q_range	— – 0.5000 Å−1
n_points	101
shell_type	directional
solvent_density	0.3340 e/ų
contrast_shell	0.0300 e/ų
crysol_version	4.1.3

dmax	120.9 Å
rg_real	36.01 Å
rg_real_error	1.04 Å
i0_real	2.4360e+08
i0_real_error	4.1560e+06
rg_reciprocal	36.06 Å
i0_reciprocal	243600000.0000
total_estimate	0.8854
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	46.7 Å
skewness	0.241
kurtosis	-0.377
angular_range	— – 0.2200 Å−1
current_alpha	0.0000
highest_alpha	52510000.0000
n_real_points	45
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.856; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.995; Smooth: 0.943

Unit Cell

length_a	82.665 Å
length_b	112.922 Å
length_c	145.241 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	24

Symmetry

space_group	P 21 21 21
int_tables_number	19
crystal_system	—

Refinement

resolution	3.100 Å
resolution_low	66.700 Å
r_factor	0.2747
r_work	0.2737
r_free	0.2950

Diffraction

temperature

100.0 K

Files (7)

• pr_distribution /app/data/pr_computation/ri/9rif/pr_distribution.json
• pr_output /app/data/pr_computation/ri/9rif/9rif.pr.out
• pr_plot /app/data/visualization/pr_computation/ri/9rif/9rif_pr_distribution.png
• saxs_curve_dat /app/data/saxs_computation/ri/9rif/9rif.dat
• saxs_fit /app/data/saxs_computation/ri/9rif/9rif.fit
• saxs_log /app/data/saxs_computation/ri/9rif/9rif.log
• saxs_plot /app/data/visualization/saxs_computation/ri/9rif/9rif_saxs_profile.png

Curves (3)

fit	/app/data/saxs_computation/ri/9rif/9rif.fit
pddf	/app/data/pr_computation/ri/9rif/9rif.pr.out
profile	/app/data/saxs_computation/ri/9rif/9rif.dat