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9rrs

AAV8 capsid in complex with Rep40 and ADP

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Protein Rep40

adeno-associated virus 2

UniProt Q89269

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 120 Capsid protein × 60 （Q8JQF8） ADENOSINE-5'-DIPHOSPHATE × 60 MAGNESIUM ION × 60 water × 120 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 2 Capsid protein × 1 （Q8JQF8） ADENOSINE-5'-DIPHOSPHATE × 1 MAGNESIUM ION × 1 water × 2 Consistent with protein count
3 Protein heterocomplex Heteromer Protein 10 Capsid protein × 5 （Q8JQF8） ADENOSINE-5'-DIPHOSPHATE × 5 MAGNESIUM ION × 5 water × 10 Consistent with protein count
4 Protein heterocomplex Heteromer Protein 12 Capsid protein × 6 （Q8JQF8） ADENOSINE-5'-DIPHOSPHATE × 6 MAGNESIUM ION × 6 water × 12 Consistent with protein count
5 Protein heterocomplex Heteromer Protein 2 Capsid protein × 1 （Q8JQF8） ADENOSINE-5'-DIPHOSPHATE × 1 MAGNESIUM ION × 1 water × 2 Consistent with protein count

Other States of the Same Protein in the Database

Monomer

None

Homodimer

None

Homotetramer

None

Other homooligomers

None

Heteromeric or nucleic-acid complex
9rm5 9rqt 9rrs 9rrs 9rrs 9rrs 9rrs 9s0n 9s10

9 assemblies

View Construct and Data Evidence
UniProt name REP40_AAV2S
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A； PDBConstruct 25–336； UniProt 1–312

Capsid protein

adeno-associated virus 8

UniProt Q8JQF8

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 120 Protein Rep40 × 60 （Q89269） ADENOSINE-5'-DIPHOSPHATE × 60 MAGNESIUM ION × 60 water × 120 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 2 Protein Rep40 × 1 （Q89269） ADENOSINE-5'-DIPHOSPHATE × 1 MAGNESIUM ION × 1 water × 2 Consistent with protein count
3 Protein heterocomplex Heteromer Protein 10 Protein Rep40 × 5 （Q89269） ADENOSINE-5'-DIPHOSPHATE × 5 MAGNESIUM ION × 5 water × 10 Consistent with protein count
4 Protein heterocomplex Heteromer Protein 12 Protein Rep40 × 6 （Q89269） ADENOSINE-5'-DIPHOSPHATE × 6 MAGNESIUM ION × 6 water × 12 Consistent with protein count
5 Protein heterocomplex Heteromer Protein 2 Protein Rep40 × 1 （Q89269） ADENOSINE-5'-DIPHOSPHATE × 1 MAGNESIUM ION × 1 water × 2 Consistent with protein count

Other States of the Same Protein in the Database

Monomer
2qa0 2qa0 3ra2 3ra2 3ra8 3ra8 3raa 3raa 6pwa 6pwa 6u20 6u20

16 assemblies; showing the first 12

Homodimer

None

Homotetramer

None

Other homooligomers
2qa0 2qa0 2qa0 2qa0 3ra2 3ra2 3ra2 3ra2 3ra8 3ra8 3ra8 3ra8

33 assemblies; showing the first 12

Heteromeric or nucleic-acid complex
3ra4 3ra4 3ra4 3ra4 3ra4 3ra4 3ra9 3ra9 3ra9 3ra9 3ra9 3ra9

22 assemblies; showing the first 12

View Construct and Data Evidence
UniProt name Q8JQF8_9VIRU
Isoform —
PDB entities 2
Chains and sequence ranges Author chain B； PDBConstruct 1–738； UniProt 1–738

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id9rrs
Deposition date deposition_date2025-06-28
Structure title titleAAV8 capsid in complex with Rep40 and ADP
Keywords keywordsAdeno-associated virus, AAV, AAA+ ATPase, VIRUS; VIRUS
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

9rrs__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

9rrs__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 1010 1011 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

9rrs__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg（Guinier）0.00 Å
Rg (electron density)111.70 Å
Total Rg112.00 Å
Atom count512520
Residues32880
Excluded volume4610800 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 9rrs__assembly_1__model_1 120-meric （120） Success 4.1.3-1-20251215 (887e7ef) View Download
2 1 9rrs__assembly_2__model_1 dimeric （2） Excluded — —
Exclusion reason： Auxiliary symmetry representation; not a complete or representative biological assembly.
3 1 9rrs__assembly_3__model_1 decameric （10） Excluded — —
Exclusion reason： Auxiliary symmetry representation; not a complete or representative biological assembly.
4 1 9rrs__assembly_4__model_1 dodecameric （12） Excluded — —
Exclusion reason： Auxiliary symmetry representation; not a complete or representative biological assembly.
5 1 9rrs__assembly_5__model_1 dimeric （2） Excluded — —
Exclusion reason： Auxiliary symmetry representation; not a complete or representative biological assembly.
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (5)

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7. Citations (1)