SAXSdb — 9rrs

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1. Structure Basics

entry_id	9rrs
deposition_date	2025-06-28
title	AAV8 capsid in complex with Rep40 and ADP
keywords	Adeno-associated virus, AAV, AAA+ ATPase, VIRUS; VIRUS
method	ELECTRON MICROSCOPY

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	29.67 Å
rg_electron	29.11 Å
i0	68174400.00
molecular_weight	62276.0 kDa
excluded_volume	76847 Å³
envelope_volume	110580 Å³
shell_volume	33175 Å³
envelope_diameter	119.9 Å
shell_rg	34.34 Å
envelope_rg	29.82 Å
shape_rg	29.04 Å
total_rg	29.82 Å
total_atoms	8542
n_residues	548
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	112.0 Å
rg_real	29.85 Å
rg_real_error	1.35 Å
i0_real	6.8170e+07
i0_real_error	1.2540e+06
rg_reciprocal	29.77 Å
i0_reciprocal	68170000.0000
total_estimate	0.8057
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	35.9 Å
skewness	0.645
kurtosis	0.455
angular_range	— – 0.2650 Å⁻¹
current_alpha	0.0000
highest_alpha	10050000.0000
n_real_points	54
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.541; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.876; Smooth: 0.969

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4. Crystallography & Experiment

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5. Entities & Polymer Info (5)

Entity 1 polymer

description	Protein Rep40
formula_weight	44148.9 kDa
ec_number	3.6.4.12
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	A
atom_count	9192

EQNKENQNPNSDAPVIRSKTSARYMELVGWLVDKGITSEKQWIQEDQASYISFNAASNSRSQIKAALDNAGKIMSLTKTAPDYLVGQQPVEDISSNRIYKILELNGYDPQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVPFYGCVNWTNENFPFNDCVDKMVIWWEEGKMTAKVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQDRMFKFELTRRLDHDFGKVTKQEVKDFFRWAKDHVVEVEHEFYVKKGGAKKRPAPSDADISEPKRVRESVAQPSTSDAEASINYADRLARGHSLGSLVPRGSGGGGSGGGGSGGGGSMDYKDHDGDYKDHDIDYKDDDDKGSENLYFQSHHHHHH

Source

organism	adeno-associated virus 2
ncbi_taxonomy_id	10804
host_organism	Escherichia coli

Entity 2 polymer

description	Capsid protein
formula_weight	81833.0 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	B

MAADGYLPDWLEDNLSEGIREWWALKPGAPKPKANQQKQDDGRGLVLPGYKYLGPFNGLDKGEPVNAADAAALEHDKAYDQQLQAGDNPYLRYNHADAEFQERLQEDTSFGGNLGRAVFQAKKRVLEPLGLVEEGAKTAPGKKRPVEPSPQRSPDSSTGIGKKGQQPARKRLNFGQTGDSESVPDPQPLGEPPAAPSGVGPNTMAAGGGAPMADNNEGADGVGSSSGNWHCDSTWLGDRVITTSTRTWALPTYNNHLYKQISNGTSGGATNDNTYFGYSTPWGYFDFNRFHCHFSPRDWQRLINNNWGFRPKRLSFKLFNIQVKEVTQNEGTKTIANNLTSTIQVFTDSEYQLPYVLGSAHQGCLPPFPADVFMIPQYGYLTLNNGSQAVGRSSFYCLEYFPSQMLRTGNNFQFTYTFEDVPFHSSYAHSQSLDRLMNPLIDQYLYYLSRTQTTGGTANTQTLGFSQGGPNTMANQAKNWLPGPCYRQQRVSTTTGQNNNSNFAWTAGTKYHLNGRNSLANPGIAMATHKDDEERFFPSNGILIFGKQNAARDNADYSDVMLTSEEEIKTTNPVATEEYGIVADNLQQQNTAPQIGTVNSQGALPGMVWQNRDVYLQGPIWAKIPHTDGNFHPSPLMGGFGLKHPPPQILIKNTPVPADPPTTFNQSKLNSFITQYSTGQVSVEIEWELQKENSKRWNPEIQYTSNYYKSTSVDFAVNTEGVYSEPRPIGTRYLTRNL

Source

organism	adeno-associated virus 8
ncbi_taxonomy_id	202813
host_organism	Homo sapiens

Entity 3 non-polymer

description	ADENOSINE-5'-DIPHOSPHATE
formula_weight	427.2 kDa
src_method	syn
entity_count	1

Entity 4 non-polymer

description	MAGNESIUM ION
formula_weight	24.3 kDa
src_method	syn
entity_count	1

Entity 5 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	217

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6. Citations (1)

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resolution	1.88 Å
resolution_method	—
num_particles	125371

fit	/app/data/saxs_computation/rr/9rrs/9rrs.fit
pddf	/app/data/pr_computation/rr/9rrs/9rrs.pr.out
profile	/app/data/saxs_computation/rr/9rrs/9rrs.dat

AAV8 capsid in complex with Rep40 and ADP

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

EM 3D

5. Entities & Polymer Info (5)

Entity 1 polymer

Polymer

Source

Entity 2 polymer

Polymer

Source

Entity 3 non-polymer

Entity 4 non-polymer

Entity 5 water

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)