Complex of rice blast (Magnaporthe oryzae) effector protein AVR-Pia with the HMA domain of OsHPP09 from rice (Oryza sativa)

entry_id	9rsv
deposition_date	2025-07-01
last_revision	2025-08-27
title	Complex of rice blast (Magnaporthe oryzae) effector protein AVR-Pia with the HMA domain of OsHPP09 from rice (Oryza sativa)
keywords	Effector, HMA, PLANT PROTEIN; PLANT PROTEIN
method	X-RAY DIFFRACTION

rg_guinier	15.81 Å
rg_electron	14.54 Å
i0	4498670.00
molecular_weight	15217.0 kDa
excluded_volume	19152 ų
envelope_volume	21992 ų
shell_volume	12832 ų
envelope_diameter	50.5 Å
shell_rg	20.20 Å
envelope_rg	14.84 Å
shape_rg	14.50 Å
total_rg	15.77 Å
total_atoms	2157
n_residues	136
n_harmonics	20
q_range	— – 0.5000 Å−1
n_points	101
shell_type	directional
solvent_density	0.3340 e/ų
contrast_shell	0.0300 e/ų
crysol_version	4.1.3

dmax	50.5 Å
rg_real	15.72 Å
rg_real_error	0.25 Å
i0_real	4.4990e+06
i0_real_error	5.2550e+04
rg_reciprocal	15.73 Å
i0_reciprocal	4499000.0000
total_estimate	0.8912
solution_quality	GOOD a GOOD solution
n_peaks	1
r_peak_primary	49.3 Å
skewness	0.160
kurtosis	-0.354
angular_range	— – 0.5000 Å−1
current_alpha	0.0000
highest_alpha	937600.0000
n_real_points	80
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.863; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.997; Smooth: 0.996

Unit Cell

length_a	93.665 Å
length_b	93.665 Å
length_c	72.873 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	120.00 °
z_pdb	12

Symmetry

space_group	P 61 2 2
int_tables_number	178
crystal_system	—

Refinement

resolution	1.650 Å
resolution_low	46.830 Å
r_factor	—
r_work	0.1760
r_free	0.2021

Diffraction

temperature

100.0 K

Files (7)

• pr_distribution /app/data/pr_computation/rs/9rsv/pr_distribution.json
• pr_output /app/data/pr_computation/rs/9rsv/9rsv.pr.out
• pr_plot /app/data/visualization/pr_computation/rs/9rsv/9rsv_pr_distribution.png
• saxs_curve_dat /app/data/saxs_computation/rs/9rsv/9rsv.dat
• saxs_fit /app/data/saxs_computation/rs/9rsv/9rsv.fit
• saxs_log /app/data/saxs_computation/rs/9rsv/9rsv.log
• saxs_plot /app/data/visualization/saxs_computation/rs/9rsv/9rsv_saxs_profile.png

Curves (3)

fit	/app/data/saxs_computation/rs/9rsv/9rsv.fit
pddf	/app/data/pr_computation/rs/9rsv/9rsv.pr.out
profile	/app/data/saxs_computation/rs/9rsv/9rsv.dat