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9s6a

Crystal structure of Arabidopsis thaliana FUT11 complexed to GDP and G0

Method: X-RAY DIFFRACTION D_max: 83.4 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	9s6a
deposition_date	2025-07-31
title	Crystal structure of Arabidopsis thaliana FUT11 complexed to GDP and G0
keywords	Fucosyltransferase, N-glycans, plants, Core-fucosylation, TRANSFERASE; TRANSFERASE
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	25.10 Å
rg_electron	24.24 Å
i0	40377300.00
molecular_weight	48407.0 kDa
excluded_volume	60316 Å³
envelope_volume	73038 Å³
shell_volume	25761 Å³
envelope_diameter	84.8 Å
shell_rg	31.01 Å
envelope_rg	24.53 Å
shape_rg	24.20 Å
total_rg	25.14 Å
total_atoms	3398
n_residues	410
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	83.4 Å
rg_real	25.15 Å
rg_real_error	0.66 Å
i0_real	4.0380e+07
i0_real_error	5.4620e+05
rg_reciprocal	25.13 Å
i0_reciprocal	40380000.0000
total_estimate	0.8789
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	27.8 Å
skewness	0.425
kurtosis	-0.284
angular_range	— – 0.3150 Å⁻¹
current_alpha	0.0000
highest_alpha	8901000.0000
n_real_points	64
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.840; Stabil: 0.995; Sysdev: 1.000; Positv: 1.000; Valcen: 0.939; Smooth: 0.975

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4. Crystallography & Experiment

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5. Entities & Polymer Info (4)

Entity 1 polymer

description	Glycoprotein 3-alpha-L-fucosyltransferase A
formula_weight	47088.6 kDa
ec_number	2.4.1.214
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	A
atom_count	3714

IEKCQEWLERVDSVTYSRDFTKDPIFISGSNKDFKSCSVDCVMGFTSDKKPDAAFGLSHQPGTLSIIRSMESAQYYQENNLAQARRKGYDIVMTTSLSSDVPVGYFSWAEYDIMAPVQPKTEKALAAAFISNCAARNFRLQALEALMKTNVKIDSYGGCHRNRDGSVEKVEALKHYKFSLAFENTNEEDYVTEKFFQSLVAGSVPVVVGAPNIEEFAPSPDSFLHIKQMDDVKAVAKKMKYLADNPDAYNQTLRWKHEGPSDSFKALIDMAAVHSSCRLCIFVATRIREQEEKSPEFKRRPCKCTRGSETVYHLYVRERGRFDMESIFLKDGNLTLEALESAVLAKFMSLRYEPIWKKERPASLRGDGKLRVHGIYPIGLTQRQALYNFKFEGNSSLSTHIQRNPCPKFEVVFV

Source

organism	Arabidopsis thaliana
common_name	thale cress
ncbi_taxonomy_id	3702
host_organism	Homo sapiens

Entity 2 branched

description	;2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose ;
formula_weight	1317.2 kDa
src_method	syn
entity_count	1

Entity 3 non-polymer

description	GUANOSINE-5'-DIPHOSPHATE
formula_weight	443.2 kDa
src_method	syn
entity_count	1

Entity 4 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	281

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6. Citations (1)

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length_a	77.663 Å
length_b	41.150 Å
length_c	82.425 Å
angle_alpha	90.00 °
angle_beta	96.89 °
angle_gamma	90.00 °
z_pdb	2

space_group	P 1 21 1
int_tables_number	4
crystal_system	—

resolution	1.410 Å
resolution_low	19.960 Å
r_factor	0.2058
r_work	0.2049
r_free	0.2284

fit	/app/data/saxs_computation/s6/9s6a/9s6a.fit
pddf	/app/data/pr_computation/s6/9s6a/9s6a.pr.out
profile	/app/data/saxs_computation/s6/9s6a/9s6a.dat

Crystal structure of Arabidopsis thaliana FUT11 complexed to GDP and G0

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction