9sop

Tissue inhibitor of metalloproteinase-1 (TIMP-1)

Method: X-RAY DIFFRACTION Dmax: 87.8 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

Metalloproteinase inhibitor 1

Homo sapiens

UniProt P01033

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein monomer Monomer Protein × 1 PDB declaration: monomeric(1) Consistent with protein copy count Chain A; UniProt 24–203 Not recorded GOL GLYCEROL × 2 EDO 1,2-ETHANEDIOL × 3 FLC CITRATE ANION × 1 P3G 3,6,9,12,15-PENTAOXAHEPTADECANE × 1 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, SITTING DROP;pH 8.4;293.15 K;0.2 M Lithium Citrate tribasic tetrahydrate, 20% PEG 3350, 15% Glycerol Resolution 1.95 Å R-free 0.239
2 Protein monomer Monomer Protein × 1 PDB declaration: monomeric(1) Consistent with protein copy count Chain B; UniProt 24–203 Not recorded GOL GLYCEROL × 1 EDO 1,2-ETHANEDIOL × 5 PGE TRIETHYLENE GLYCOL × 1 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, SITTING DROP;pH 8.4;293.15 K;0.2 M Lithium Citrate tribasic tetrahydrate, 20% PEG 3350, 15% Glycerol Resolution 1.95 Å R-free 0.239

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

12 other PDB entries and 17 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name TIMP1_HUMAN
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–180; UniProt 24–203 Author chain B; PDBConstruct 1–180; UniProt 24–203

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 9sop

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 9sop
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2. Structure Basics 2. Structure Basics

Entry ID entry_id9sop
Deposition date deposition_date2025-09-15
Structure title titleTissue inhibitor of metalloproteinase-1 (TIMP-1)
Keywords keywordsHydrolase inhibitor, HYDROLASE; HYDROLASE
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier25.27
Radius of gyration Rg (electron density) rg_electron24.69
Forward intensity I(0) i029420100.00
Molecular weight molecular_weight41256.0 kDa
Excluded volume excluded_volume51527 ų
Envelope volume envelope_volume64321 ų
Hydration-shell volume shell_volume22850 ų
Envelope diameter envelope_diameter93.7
Shell Rg shell_rg30.46
Envelope Rg envelope_rg24.83
Shape Rg shape_rg24.64
Total Rg total_rg25.55
Total atoms total_atoms2883
Residues n_residues356
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax87.8
Rg (real space) rg_real25.33
Rg uncertainty (real space) rg_real_error0.80
I(0) (real space) i0_real2.9420e+07
I(0) uncertainty (real space) i0_real_error4.5040e+05
Rg (reciprocal space) rg_reciprocal25.32
I(0) (reciprocal space) i0_reciprocal29420000.0000
Solution quality estimate total_estimate0.8652
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary26.5
Skewness Skewness skewness0.411
Kurtosis Kurtosis kurtosis-0.277
Angular range angular_range— – 0.3150 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha3883000.0000
Real-space data points n_real_points64
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.818; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.843; Smooth: 0.946

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (7)

8. Citations (1)

9. Files and Curves (10)