← Back to search

9swk

Immature TBEV envelope spike with interaction partners underneath - SPA

Method: ELECTRON MICROSCOPY D_max: 175.9 Å Quality: GOOD

SAXS Profile

P(r) Distribution

▼

1. Structure Basics

entry_id	9swk
deposition_date	2025-10-07
title	Immature TBEV envelope spike with interaction partners underneath - SPA
keywords	tick borne encephalitis virus, envelope, flavivirus, spike, VIRUS, asymmetric, immature particle, SPA; VIRUS
method	ELECTRON MICROSCOPY

▼

Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

▼

2. SAXS Parameters (CRYSOL)

rg_guinier	53.26 Å
rg_electron	52.98 Å
i0	1175920000.00
molecular_weight	273130.0 kDa
excluded_volume	337130 Å³
envelope_volume	579990 Å³
shell_volume	93052 Å³
envelope_diameter	181.8 Å
shell_rg	54.88 Å
envelope_rg	51.46 Å
shape_rg	52.97 Å
total_rg	53.09 Å
total_atoms	19177
n_residues	2610
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

▼

3. P(r) Analysis (GNOM)

dmax	175.9 Å
rg_real	53.12 Å
rg_real_error	1.54 Å
i0_real	1.1760e+09
i0_real_error	2.3820e+07
rg_reciprocal	53.37 Å
i0_reciprocal	1176000000.0000
total_estimate	0.8905
solution_quality	GOOD a GOOD solution
n_peaks	1
r_peak_primary	64.5 Å
skewness	0.183
kurtosis	-0.463
angular_range	— – 0.1500 Å⁻¹
current_alpha	0.0000
highest_alpha	76320000.0000
n_real_points	31
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.899; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.975; Smooth: 0.900

▶

4. Crystallography & Experiment

▶

5. Entities & Polymer Info (3)

Entity 1 polymer

description	Envelope protein E
formula_weight	53572.3 kDa
src_method	nat
entity_count	6

Polymer

type	polypeptide(L)
strand_id	A,B,C,G,H,I
atom_count	19177

SRCTHLENRDFVTGTQGTTRVTLVLELGGCVTITAEGKPSMDVWLDAIYQENPAKTREYCLHAKLSDTKVAARCPTMGPATLAEEHQGGTVCKRDQSDRGWGNHCGLFGKGSIVACVKAACEAKKKATGHVYDANKIVYTVKVEPHTGDYVAANETHSGRKTASFTISSEKTILTMGEYGDVSLLCRVASGVDLAQTVILELDKTVEHLPTAWQVHRDWFNDLALPWKHEGAQNWNNAERLVEFGAPHAVKMDVYNLGDQTGVLLKALAGVPVAHIEGTKYHLKSGHVTCEVGLEKLKMKGLTYTMCDKTKFTWKRAPTDSGHDTVVMEVTFSGTKPCRIPVRAVAHGSPDVNVAMLITPNPTIENNGGGFIEMQLPPGDNIIYVGELSHQWFQKGSSIGRVFQKTKKGIERLTVIGEHAWDFGSAGGFLSSIGKAVHTVLGGAFNSIFGGVGFLPKLLLGVALAWLGLNMRNPTMSMSFLLAGGLVLAMTLGVGA

Entity 2 polymer

description	Protein prM
formula_weight	18076.7 kDa
src_method	nat
entity_count	3

Polymer

type	polypeptide(L)
strand_id	D,E,F

TVRKERDGSTVIRAEGKDAATQVRVENGTCVILATDMGSWCDDSLSYECVTIDQGEEPVDVDCFCRNVDGVYLEYGRCGKQEGSRTRRSVLIPSHAQGELTGRGHKWLEGDSLRTHLTRVEGWVWKNKLLALAMVTVVWLTLESVVTRVAVLVVLLCLAPVYA

Entity 3 non-polymer

description	2-acetamido-2-deoxy-beta-D-glucopyranose
formula_weight	221.2 kDa
src_method	syn
entity_count	6

▶

6. Citations (1)

▶

length_a	1.000 Å
length_b	1.000 Å
length_c	1.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	—

space_group	P 1
int_tables_number	1
crystal_system	—

resolution	3.570 Å
resolution_low	— Å
r_factor	—
r_work	—
r_free	—

resolution	3.57 Å
resolution_method	—
num_particles	552993

fit	/app/data/saxs_computation/sw/9swk/9swk.fit
pddf	/app/data/pr_computation/sw/9swk/9swk.pr.out
profile	/app/data/saxs_computation/sw/9swk/9swk.dat

Immature TBEV envelope spike with interaction partners underneath - SPA

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

EM 3D

5. Entities & Polymer Info (3)

Entity 1 polymer

Polymer

Entity 2 polymer

Polymer

Entity 3 non-polymer

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)