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9sya

Crystal structure of HERV-K envelope glycoprotein surface subunit with cholates and sulfates bound

Method: X-RAY DIFFRACTION Dmax: 100.4 Å Quality: GOOD

SAXS Profile

SAXS profile for 9sya

P(r) Distribution

P(r) distribution for 9sya
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1. Structure Basics

entry_id9sya
deposition_date2025-10-10
titleCrystal structure of HERV-K envelope glycoprotein surface subunit with cholates and sulfates bound
keywords;Envelope protein, VIRAL PROTEIN, endogenous retrovirus, betaretrovirus, envelope glycoprotein, N-linked glycosylation, ligand binding site, receptor binding protein ;; VIRAL PROTEIN
methodX-RAY DIFFRACTION
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Download Data

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2. SAXS Parameters (CRYSOL)

rg_guinier29.14 Å
rg_electron28.46 Å
i0102904000.00
molecular_weight80053.0 kDa
excluded_volume100400 ų
envelope_volume132810 ų
shell_volume38254 ų
envelope_diameter108.2 Å
shell_rg36.10 Å
envelope_rg28.72 Å
shape_rg28.41 Å
total_rg29.40 Å
total_atoms5613
n_residues647
n_harmonics20
q_range— – 0.5000 Å−1
n_points101
shell_typedirectional
solvent_density0.3340 e/ų
contrast_shell0.0300 e/ų
crysol_version4.1.3
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3. P(r) Analysis (GNOM)

dmax100.4 Å
rg_real29.08 Å
rg_real_error0.88 Å
i0_real1.0290e+08
i0_real_error1.5920e+06
rg_reciprocal29.11 Å
i0_reciprocal102900000.0000
total_estimate0.7905
solution_quality GOOD a GOOD solution
n_peaks3
r_peak_primary35.3 Å
skewness0.313
kurtosis-0.223
angular_range— – 0.2700 Å−1
current_alpha0.0000
highest_alpha25400000.0000
n_real_points55
gnom_version4.1.3
quality_criteria AN1: 0.000; Oscil: 0.764; Stabil: 0.994; Sysdev: 1.000; Positv: 1.000; Valcen: 1.000; Smooth: 0.000
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4. Crystallography & Experiment

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5. Entities & Polymer Info (9)

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6. Citations (1)

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7. Files & Curves (10)