9t2d
Jumonji domain-containing protein 2B with crystallization epitope mutations L916G:R917A:A918D
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9t2d |
| deposition_date | 2025-10-22 |
| last_revision | 2025-12-03 |
| title | Jumonji domain-containing protein 2B with crystallization epitope mutations L916G:R917A:A918D |
| keywords | Crystal epitope, OXIDOREDUCTASE; OXIDOREDUCTASE |
| method | X-RAY DIFFRACTION |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 19.76 Å |
| rg_electron | 19.26 Å |
| i0 | 4383800.00 |
| molecular_weight | 14974.0 kDa |
| excluded_volume | 18648 ų |
| envelope_volume | 24404 ų |
| shell_volume | 11423 ų |
| envelope_diameter | 64.2 Å |
| shell_rg | 23.56 Å |
| envelope_rg | 19.11 Å |
| shape_rg | 19.25 Å |
| total_rg | 20.01 Å |
| total_atoms | 1050 |
| n_residues | 128 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 62.2 Å |
| rg_real | 19.86 Å |
| rg_real_error | 0.47 Å |
| i0_real | 4.3840e+06 |
| i0_real_error | 6.3650e+04 |
| rg_reciprocal | 19.85 Å |
| i0_reciprocal | 4384000.0000 |
| total_estimate | 0.8435 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 3 |
| r_peak_primary | 16.6 Å |
| skewness | 0.289 |
| kurtosis | -0.856 |
| angular_range | — – 0.4000 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 1191000.0000 |
| n_real_points | 72 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.749; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.749; Smooth: 0.965 |