9t2w
YdhG-like domain-containing protein (Frataxin) from Listeria monocytogenes
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9t2w |
| deposition_date | 2025-10-24 |
| last_revision | 2025-11-19 |
| title | YdhG-like domain-containing protein (Frataxin) from Listeria monocytogenes |
| keywords | ;frataxin, iron, iron delivery, metal binding, interaction, heme, iron-sulfur cluster, bacteria, gram-positive, cyaY, iron metabolism, METAL BINDING PROTEIN ;; METAL BINDING PROTEIN |
| method | X-RAY DIFFRACTION |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 21.24 Å |
| rg_electron | 20.26 Å |
| i0 | 13625700.00 |
| molecular_weight | 28603.0 kDa |
| excluded_volume | 36186 ų |
| envelope_volume | 42306 ų |
| shell_volume | 18260 ų |
| envelope_diameter | 72.3 Å |
| shell_rg | 25.96 Å |
| envelope_rg | 20.50 Å |
| shape_rg | 20.25 Å |
| total_rg | 21.15 Å |
| total_atoms | 2022 |
| n_residues | 243 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 71.6 Å |
| rg_real | 21.31 Å |
| rg_real_error | 0.60 Å |
| i0_real | 1.3630e+07 |
| i0_real_error | 1.8980e+05 |
| rg_reciprocal | 21.30 Å |
| i0_reciprocal | 13630000.0000 |
| total_estimate | 0.7906 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 3 |
| r_peak_primary | 24.2 Å |
| skewness | 0.460 |
| kurtosis | -0.219 |
| angular_range | — – 0.3750 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 3376000.0000 |
| n_real_points | 69 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.781; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.930; Smooth: 0.000 |