← Back to search

9tij

Phage 812 baseplate in the pre-contraction state - lower arm (segment DEF)

Method: ELECTRON MICROSCOPY D_max: 174.6 Å Quality: REASONABLE

SAXS Profile

P(r) Distribution

▼

1. Structure Basics

entry_id	9tij
deposition_date	2025-12-05
title	Phage 812 baseplate in the pre-contraction state - lower arm (segment DEF)
keywords	phage, baseplate, VIRUS; VIRUS
method	ELECTRON MICROSCOPY

▼

Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

▼

2. SAXS Parameters (CRYSOL)

rg_guinier	46.91 Å
rg_electron	47.54 Å
i0	168068000.00
molecular_weight	108230.0 kDa
excluded_volume	136470 Å³
envelope_volume	209430 Å³
shell_volume	41424 Å³
envelope_diameter	166.0 Å
shell_rg	44.01 Å
envelope_rg	46.88 Å
shape_rg	47.52 Å
total_rg	47.44 Å
total_atoms	7642
n_residues	971
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

▼

3. P(r) Analysis (GNOM)

dmax	174.6 Å
rg_real	47.55 Å
rg_real_error	2.58 Å
i0_real	1.6810e+08
i0_real_error	3.5420e+06
rg_reciprocal	46.91 Å
i0_reciprocal	167900000.0000
total_estimate	0.7163
solution_quality	REASONABLE a REASONABLE solution
n_peaks	2
r_peak_primary	36.0 Å
skewness	0.498
kurtosis	-0.565
angular_range	— – 0.1700 Å⁻¹
current_alpha	0.0000
highest_alpha	12980000.0000
n_real_points	35
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.567; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.607; Smooth: 0.000

▶

4. Crystallography & Experiment

▶

5. Entities & Polymer Info (2)

Entity 1 polymer

description	ORF64
formula_weight	19259.6 kDa
src_method	nat
entity_count	5

Polymer

type	polypeptide(L)
strand_id	A,B,C,D,E
atom_count	7642

MAIATYNSHVELAKYLVSKADSVYLTIGKSTPWSNETNPPQPDENATVLQEVIGYKKATKVTLVRPSKSPEDDNKNLISYGNKSWVEVTPENAKAEGAKWVYLESSIVGDELPLGTYRQVGFVMDLVAKSGISKFNLVPSEVESTGTLLFFDNKQFQNRSEQTTAKERFIVEV

Entity 2 polymer

description	CBM-cenC domain-containing protein
formula_weight	72654.7 kDa
src_method	nat
entity_count	3

Polymer

type	polypeptide(L)
strand_id	G,H,I

MAFNYTPLTETQKLKDMYPKVNDIGNFLKTEVNLSDVKQISQPDFNNILASIPDSGNYYVTNSKGAPSGEATAGFVRLDKRNVNYYKIYYSPYSSNKMYIKTYANGTVYDWISFKLDEGSLYNEGNTLNVKELTESTTQYATLVNPPKENLNTGWVNYKESKNGVSSLVEFNPVNSTSTFKMIRKLPVQEQKPNLLKDSLFVYPETSYSNIKTDNWDTPPFWGYSSNSGRSGVRFRGENTVQIDDGSDTYPSVVSNRFKMGKELSVGDTVTVSVYAKINDPALLKDNLVYFELAGYDTVDDTSKNPYTGGRREITASEITTEWKKYSFTFTIPENTIGASGVKVNYVSLLLRMNCSSSKGNGAVVYYALPKLEKSSKVTPFITHENDVRKYDEIWSNWQEVISKDELKGHSPVDIEYNDYFKYQWWKSEVNEKSLKDLAMTVPQGYHTFYCQGSIAGTPKGRSIRGTIQVDYDKCDPYRANKFVKLLFTDTEGIPYTLYYGGYNQGWKPLKQSETSTLLWKGTLDFGSTEAVNLNDSLDNYDLIEVTYWTRSAGHFSTKRLDIKNTSNLLYIRDFNISNDSTGSSVDFFEGYCTFPTRTSVQPGMVKSITLDGSTNTTKVASWNEKERIKVYNIMGINRG

▶

6. Citations (1)

▶

length_a	1.000 Å
length_b	1.000 Å
length_c	1.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	—

space_group	P 1
int_tables_number	1
crystal_system	—

resolution	6.30 Å
resolution_method	—
num_particles	22031

fit	/app/data/saxs_computation/ti/9tij/9tij.fit
pddf	/app/data/pr_computation/ti/9tij/9tij.pr.out
profile	/app/data/saxs_computation/ti/9tij/9tij.dat

Phage 812 baseplate in the pre-contraction state - lower arm (segment DEF)

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

EM 3D

5. Entities & Polymer Info (2)

Entity 1 polymer

Polymer

Entity 2 polymer

Polymer

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)