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9tl1

;Structure of duck RIG-I (delta CARDs) bound to 31-mer RNA mismatched hairpin with 5'ppA-U blunt end mimicking the influenza B virus vRNA promoter (panhandle) and to ADP. ;

Method: X-RAY DIFFRACTION D_max: 83.6 Å Quality: REASONABLE

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	9tl1
deposition_date	2025-12-10
last_revision	2025-12-31
title	;Structure of duck RIG-I (delta CARDs) bound to 31-mer RNA mismatched hairpin with 5'ppA-U blunt end mimicking the influenza B virus vRNA promoter (panhandle) and to ADP. ;
keywords	RNA helicase, RNA BINDING PROTEIN; RNA BINDING PROTEIN
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	27.66 Å
rg_electron	27.24 Å
i0	141642000.00
molecular_weight	86745.0 kDa
excluded_volume	105690 Å³
envelope_volume	132130 Å³
shell_volume	39132 Å³
envelope_diameter	89.0 Å
shell_rg	35.66 Å
envelope_rg	27.16 Å
shape_rg	27.28 Å
total_rg	27.91 Å
total_atoms	6034
n_residues	702
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	83.6 Å
rg_real	27.51 Å
rg_real_error	0.39 Å
i0_real	1.4160e+08
i0_real_error	1.8690e+06
rg_reciprocal	27.56 Å
i0_reciprocal	141600000.0000
total_estimate	0.6900
solution_quality	REASONABLE a REASONABLE solution
n_peaks	2
r_peak_primary	33.8 Å
skewness	0.212
kurtosis	-0.459
angular_range	— – 0.2850 Å⁻¹
current_alpha	0.0000
highest_alpha	29800000.0000
n_real_points	58
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.945; Stabil: 1.000; Sysdev: 0.075; Positv: 1.000; Valcen: 0.987; Smooth: 0.918

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4. Crystallography & Experiment

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5. Entities & Polymer Info (8)

Entity 1 polymer

description	RNA helicase
formula_weight	79358.1 kDa
ec_number	3.6.4.13
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	A
atom_count	6747

ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDQCHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGRGRAAGSKCILVTSKTEVVENEKCNRYKEEMMNKAVEKIQKWDEETFAKKIHNLQMKERVLRDSRRKEIKPKVVEGQKNLLCGKCKAYACSTDDIRIIKDSHHIVLGEAFKERYTTKPHKKPMQFDGFEKKSKMYCRNNNCQHDWGITVKYLTFDNLPVIKIKSFVMESTATGTQMDFQKWKSINSSLKNFDVEEMSNLYPPF

Source

organism	Anas platyrhynchos
common_name	mallard
ncbi_taxonomy_id	8839
host_organism	Spodoptera frugiperda

Entity 2 polymer

description	;31-mer RNA hairpin with 5'ppA-U blunt end mimicking the influenza B virus vRNA promoter (panhandle). ;
formula_weight	9614.8 kDa
src_method	syn
entity_count	1

Polymer

type	polyribonucleotide
strand_id	R

GUAGUAACAAGAGGAAACUCUGCUUCUGCU

Entity 3 non-polymer

description	ZINC ION
formula_weight	65.4 kDa
src_method	syn
entity_count	1

Entity 4 non-polymer

description	ADENOSINE-5'-DIPHOSPHATE
formula_weight	427.2 kDa
src_method	syn
entity_count	2

Entity 5 non-polymer

description	GLYCEROL
formula_weight	92.1 kDa
src_method	syn
entity_count	2

Entity 6 non-polymer

description	POTASSIUM ION
formula_weight	39.1 kDa
src_method	syn
entity_count	1

Entity 7 non-polymer

description	MAGNESIUM ION
formula_weight	24.3 kDa
src_method	syn
entity_count	1

Entity 8 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	333

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6. Citations (1)

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length_a	87.883 Å
length_b	100.026 Å
length_c	190.128 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	8

space_group	C 2 2 21
int_tables_number	20
crystal_system	—

resolution	1.704 Å
resolution_low	95.064 Å
r_factor	—
r_work	0.1853
r_free	0.2252

fit	/app/data/saxs_computation/tl/9tl1/9tl1.fit
pddf	/app/data/pr_computation/tl/9tl1/9tl1.pr.out
profile	/app/data/saxs_computation/tl/9tl1/9tl1.dat

;Structure of duck RIG-I (delta CARDs) bound to 31-mer RNA mismatched hairpin with 5'ppA-U blunt end mimicking the influenza B virus vRNA promoter (panhandle) and to ADP. ;

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (8)

Entity 1 polymer

Polymer

Source

Entity 2 polymer

Polymer

Entity 3 non-polymer

Entity 4 non-polymer

Entity 5 non-polymer

Entity 6 non-polymer

Entity 7 non-polymer

Entity 8 water

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)