SAXSdb — 9tqg

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1. Structure Basics

entry_id	9tqg
deposition_date	2025-12-22
title	L. pneumophila 3-methylcrotonyl-CoA carboxylase A1B6
keywords	3-methylcrotonyl-CoA carboxylase, ligase, biotin; LIGASE
method	ELECTRON MICROSCOPY

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	46.25 Å
rg_electron	45.29 Å
i0	1899950000.00
molecular_weight	364650.0 kDa
excluded_volume	457090 Å³
envelope_volume	626960 Å³
shell_volume	107150 Å³
envelope_diameter	155.0 Å
shell_rg	55.72 Å
envelope_rg	44.97 Å
shape_rg	45.29 Å
total_rg	45.62 Å
total_atoms	25678
n_residues	3321
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	144.9 Å
rg_real	46.32 Å
rg_real_error	0.37 Å
i0_real	1.8510e+09
i0_real_error	2.5670e+07
rg_reciprocal	46.25 Å
i0_reciprocal	1901000000.0000
total_estimate	0.7236
solution_quality	REASONABLE a REASONABLE solution
n_peaks	2
r_peak_primary	59.7 Å
skewness	0.157
kurtosis	-0.372
angular_range	— – 0.1700 Å⁻¹
current_alpha	1.9430
highest_alpha	568500000.0000
n_real_points	35
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.904; Stabil: 0.926; Sysdev: 0.000; Positv: 1.000; Valcen: 0.957; Smooth: 0.971

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4. Crystallography & Experiment

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5. Entities & Polymer Info (3)

Entity 1 polymer

description	Propionyl CoA carboxylase beta subunit
formula_weight	58525.6 kDa
ec_number	6.4.1.3
src_method	nat
entity_count	6

Polymer

type	polypeptide(L)
strand_id	A,B,C,D,E,F
atom_count	25678

MAKLTTQINTSSQEFKNNQANMQALVTDLREKIHQISLGGDEKARTKHQQQGKLLPRERLHQLLDPGSPFLELSQLAAYQVYEDTIPAAGIITGIGRVAGNECVIVVNDATVKGGTYYPLTVKKHLRAQEIALINHLPCIYLVDSGGAFLPLQDQVFADKEHFGRVFYNQAQMSALNIPQIAVVMGSCTAGGAYVPAMADESIMVKNQATIFLGGPPLVKAATGEVISAEELGGAEVHCRHSGVSDHYAENDAHALHLARVAISNLNRKKPDSIHRVDTVPPLYDSEDLTGIIPTDPRKPFDIREIIARVVDGSEFDEFKALFGTTLVCGFARLYGYPIGIIANNGILFSESAQKGSHFIELCCQRKIPLVFLQNITGFMVGSKYEASGIAKHGAKMVTAVANANVPKFTIIVGGSFGAGNYAMCGRAYAPRFLWAWPNARISVMGGEQAANVLAQITREKYAKQGKEWSLEEEEQFKTQMRSQYETQGNPYYASARLWDDGVIAPQDTRKILGLGLSAALNAPIEDTRFGVFRM

Entity 2 polymer

description	Biotin carboxylase
formula_weight	75811.0 kDa
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	L

MRGKKGLKHFSIKKYPTGIKVLDMFNKILIANRGEIACRIIKTAHSMGIQAIAVYSAADRNSLHVRLADSAYYIGEAPAKESYLNIDHIIQAAKESGAQAIHPGYGFLSENPDFAKACEQAGIVFIGPSIKAMEAMASKQLAKQLLEKTKVPLTPGYHGVEQSEEKLLSEAKKIGFPVLIKAANGGGGKGMRAVHDEKEFHDALAGAKRESMASFADDTMIIERLVLNPRHVEVQIMADNHGNVVNLFERDCSIQRRHQKIIEEAPAPNLLPVLRQRLAEAACEVARSINYRGAGTVEFLVDGEDKFYFMEMNTRLQVEHPVTEMITGLDLVAWQIKIAANDTLPLLQNQIQAQGHAIECRIYAEDPYQGFIPSIGQLQFLKEPSGDGIRIDTGVTLSSEITRYYDPMIAKLIAWGHNREEALHRLERSLAHYDIGGVKTNIPFLRAICQHVKFKEAKLSTDFLEKENISLPKPDNELGMLLAISYDYLGMINRTTDPLLQEAFGWQMHLSSHWIWRYQLNSTIIEAQITPIDNKKFKAKIENKEMVIYARYDIDQLIIEIDQKSVKARVENKDHHLIFYTDKGQLSIERFYWSKLDAQTSAHKGQLTAPMPATVVAILKNIGEQVKAGESLIVLEAMKMEHTIHAPIDGILSDIFYSVGSQVSEGAELLALSESDT

Entity 3 non-polymer

description	5-(HEXAHYDRO-2-OXO-1H-THIENO[3,4-D]IMIDAZOL-6-YL)PENTANAL
formula_weight	228.3 kDa
src_method	syn
entity_count	3

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6. Citations (1)

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length_a	1.000 Å
length_b	1.000 Å
length_c	1.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	—

space_group	P 1
int_tables_number	1
crystal_system	—

resolution	2.680 Å
resolution_low	— Å
r_factor	—
r_work	—
r_free	—

resolution	2.68 Å
resolution_method	—
num_particles	78376

fit	/app/data/saxs_computation/tq/9tqg/9tqg.fit
pddf	/app/data/pr_computation/tq/9tqg/9tqg.pr.out
profile	/app/data/saxs_computation/tq/9tqg/9tqg.dat

L. pneumophila 3-methylcrotonyl-CoA carboxylase A1B6

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

EM 3D

5. Entities & Polymer Info (3)

Entity 1 polymer

Polymer

Entity 2 polymer

Polymer

Entity 3 non-polymer

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)