9tzg
X-ray structure of the C-terminal domain (residues 366-485) of S. pombe threonylcarbamoyladenosine dehydratase at 1.55 A resolution
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9tzg |
| deposition_date | 2026-01-22 |
| title | X-ray structure of the C-terminal domain (residues 366-485) of S. pombe threonylcarbamoyladenosine dehydratase at 1.55 A resolution |
| keywords | threonylcarbamoyladenosine dehydratase, t6A, ct6A, tRNA, modifications, RNA BINDING PROTEIN; RNA BINDING PROTEIN |
| method | X-RAY DIFFRACTION |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 14.65 Å |
| rg_electron | 13.21 Å |
| i0 | 4088850.00 |
| molecular_weight | 13875.0 kDa |
| excluded_volume | 17214 ų |
| envelope_volume | 18967 ų |
| shell_volume | 11996 ų |
| envelope_diameter | 44.8 Å |
| shell_rg | 19.24 Å |
| envelope_rg | 13.58 Å |
| shape_rg | 13.15 Å |
| total_rg | 14.61 Å |
| total_atoms | 975 |
| n_residues | 118 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 45.8 Å |
| rg_real | 14.52 Å |
| rg_real_error | 0.27 Å |
| i0_real | 4.0890e+06 |
| i0_real_error | 4.4170e+04 |
| rg_reciprocal | 14.53 Å |
| i0_reciprocal | 4089000.0000 |
| total_estimate | 0.7724 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 2 |
| r_peak_primary | 19.7 Å |
| skewness | 0.039 |
| kurtosis | -0.419 |
| angular_range | — – 0.5000 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 1183000.0000 |
| n_real_points | 80 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.854; Stabil: 1.000; Sysdev: 0.499; Positv: 1.000; Valcen: 0.982; Smooth: 0.995 |