9u3w
Crystal structure of the ribokinase RBK1 in complex with ribose from Saccharomyces cerevisiae
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9u3w |
| deposition_date | 2025-03-18 |
| last_revision | 2026-03-04 |
| title | Crystal structure of the ribokinase RBK1 in complex with ribose from Saccharomyces cerevisiae |
| keywords | ribokinase, TRANSFERASE; TRANSFERASE |
| method | X-RAY DIFFRACTION |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 30.18 Å |
| rg_electron | 29.47 Å |
| i0 | 70808400.00 |
| molecular_weight | 66159.0 kDa |
| excluded_volume | 82763 ų |
| envelope_volume | 107350 ų |
| shell_volume | 31414 ų |
| envelope_diameter | 118.3 Å |
| shell_rg | 35.09 Å |
| envelope_rg | 30.23 Å |
| shape_rg | 29.48 Å |
| total_rg | 29.97 Å |
| total_atoms | 4668 |
| n_residues | 634 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 111.6 Å |
| rg_real | 30.41 Å |
| rg_real_error | 1.15 Å |
| i0_real | 7.0810e+07 |
| i0_real_error | 1.1340e+06 |
| rg_reciprocal | 30.31 Å |
| i0_reciprocal | 70800000.0000 |
| total_estimate | 0.8166 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 2 |
| r_peak_primary | 31.6 Å |
| skewness | 0.594 |
| kurtosis | 0.051 |
| angular_range | — – 0.2650 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 10590000.0000 |
| n_real_points | 54 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.615; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.802; Smooth: 0.965 |