9u46
;The X-ray structure of N-terminal catalytic domain of Thermoplasma acidophilum tRNA methyltransferase Trm56 (Ta0931) in complex with 5'-Methylthioadenosine ;
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9u46 |
| deposition_date | 2025-03-19 |
| title | ;The X-ray structure of N-terminal catalytic domain of Thermoplasma acidophilum tRNA methyltransferase Trm56 (Ta0931) in complex with 5'-Methylthioadenosine ; |
| keywords | ;2'-O methylation, SPOUT superfamily, Archaea, TRANSFERASE ;; TRANSFERASE |
| method | X-RAY DIFFRACTION |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 16.23 Å |
| rg_electron | 14.72 Å |
| i0 | 5974540.00 |
| molecular_weight | 17631.0 kDa |
| excluded_volume | 22053 ų |
| envelope_volume | 24340 ų |
| shell_volume | 13829 ų |
| envelope_diameter | 46.9 Å |
| shell_rg | 20.80 Å |
| envelope_rg | 15.06 Å |
| shape_rg | 14.73 Å |
| total_rg | 15.85 Å |
| total_atoms | 1242 |
| n_residues | 150 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 49.1 Å |
| rg_real | 16.10 Å |
| rg_real_error | 0.23 Å |
| i0_real | 5.9750e+06 |
| i0_real_error | 4.9730e+04 |
| rg_reciprocal | 16.11 Å |
| i0_reciprocal | 5975000.0000 |
| total_estimate | 0.9037 |
| solution_quality | EXCELLENT a EXCELLENT solution |
| n_peaks | 2 |
| r_peak_primary | 21.4 Å |
| skewness | 0.068 |
| kurtosis | -0.471 |
| angular_range | — – 0.4900 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 908000.0000 |
| n_real_points | 79 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.930; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.979; Smooth: 0.974 |