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9u9h

Surface Tubular Element of Vaccinia Virus

Method: ELECTRON MICROSCOPY D_max: 104.6 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	9u9h
deposition_date	2025-03-28
title	Surface Tubular Element of Vaccinia Virus
keywords	poxvirus, membrane protein, VIRAL PROTEIN; VIRAL PROTEIN
method	ELECTRON MICROSCOPY

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	30.78 Å
rg_electron	30.02 Å
i0	66991300.00
molecular_weight	79637.0 kDa
excluded_volume	106450 Å³
envelope_volume	136080 Å³
shell_volume	38447 Å³
envelope_diameter	123.1 Å
shell_rg	36.38 Å
envelope_rg	30.27 Å
shape_rg	30.07 Å
total_rg	30.53 Å
total_atoms	5586
n_residues	664
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	104.6 Å
rg_real	30.81 Å
rg_real_error	1.01 Å
i0_real	6.6990e+07
i0_real_error	1.1520e+06
rg_reciprocal	30.80 Å
i0_reciprocal	66990000.0000
total_estimate	0.7758
solution_quality	GOOD a GOOD solution
n_peaks	3
r_peak_primary	36.9 Å
skewness	0.437
kurtosis	0.055
angular_range	— – 0.2550 Å⁻¹
current_alpha	0.0000
highest_alpha	5058000.0000
n_real_points	52
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.696; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.995; Smooth: 0.000

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4. Crystallography & Experiment

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5. Entities & Polymer Info (3)

Entity 1 polymer

description	Virion membrane protein OPG140
formula_weight	10003.1 kDa
src_method	nat
entity_count	4

Polymer

type	polypeptide(L)
strand_id	A,D,G,J
atom_count	5586

MDMMLMIGNYFSGVLIAGIILLILSCIFAFIDFSKSTSPTRTWKVLSIMAFILGIIITVGMLIYSMWGKHCAPHRVSGVIHTNHSDISMN

Entity 2 polymer

description	Mature 21 kDa protein OPG144
formula_weight	19027.3 kDa
src_method	nat
entity_count	4

Polymer

type	polypeptide(L)
strand_id	B,E,H,K

AGVLDKDLFTEEQQQSFMPKDGGMMQNDYGGMNDYLGIFKNNDVRTLLGLILFVLALYSPPLISILMIFISSFLLPLTSLVITYCLVTQMYRGGNGNTVGMSIVCIVAAVIIMAINVFTNSQIFNIISYIILFILFFAYVMNIERQDYRRSINVTIPEQYTCNKPYTAG

Entity 3 non-polymer

description	1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE
formula_weight	678.9 kDa
src_method	syn
entity_count	9

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6. Citations (1)

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length_a	1.000 Å
length_b	1.000 Å
length_c	1.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	—

space_group	P 1
int_tables_number	1
crystal_system	—

resolution	3.23 Å
resolution_method	—
num_particles	477012

fit	/app/data/saxs_computation/u9/9u9h/9u9h.fit
pddf	/app/data/pr_computation/u9/9u9h/9u9h.pr.out
profile	/app/data/saxs_computation/u9/9u9h/9u9h.dat

Surface Tubular Element of Vaccinia Virus

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

EM 3D

5. Entities & Polymer Info (3)

Entity 1 polymer

Polymer

Entity 2 polymer

Polymer

Entity 3 non-polymer

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)