9ubf
X-ray structure of Clostridioides difficile autolysin Acd33800 catalytic domain
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9ubf |
| deposition_date | 2025-04-03 |
| title | X-ray structure of Clostridioides difficile autolysin Acd33800 catalytic domain |
| keywords | Endopeptidase, Hydrolase, Clostridioides difficile, ANTIMICROBIAL PROTEIN; ANTIMICROBIAL PROTEIN |
| method | X-RAY DIFFRACTION |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 20.41 Å |
| rg_electron | 19.91 Å |
| i0 | 13483200.00 |
| molecular_weight | 26961.0 kDa |
| excluded_volume | 33364 ų |
| envelope_volume | 38183 ų |
| shell_volume | 17011 ų |
| envelope_diameter | 72.2 Å |
| shell_rg | 25.05 Å |
| envelope_rg | 20.06 Å |
| shape_rg | 19.90 Å |
| total_rg | 20.64 Å |
| total_atoms | 1903 |
| n_residues | 240 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 71.9 Å |
| rg_real | 20.51 Å |
| rg_real_error | 0.49 Å |
| i0_real | 1.3480e+07 |
| i0_real_error | 1.6490e+05 |
| rg_reciprocal | 20.49 Å |
| i0_reciprocal | 13480000.0000 |
| total_estimate | 0.7591 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 2 |
| r_peak_primary | 20.6 Å |
| skewness | 0.496 |
| kurtosis | -0.269 |
| angular_range | — – 0.3900 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 4651000.0000 |
| n_real_points | 71 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.666; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.866; Smooth: 0.000 |