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9urz

Cryo-EM structure of the Prohibitin complex from Chaetomium thermophilum

Method: ELECTRON MICROSCOPY D_max: 210.1 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	9urz
deposition_date	2025-04-30
title	Cryo-EM structure of the Prohibitin complex from Chaetomium thermophilum
keywords	Scaffold, SPFH family, MEMBRANE PROTEIN; MEMBRANE PROTEIN
method	ELECTRON MICROSCOPY

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	74.93 Å
rg_electron	75.17 Å
i0	5496240000.00
molecular_weight	636210.0 kDa
excluded_volume	801490 Å³
envelope_volume	1782200 Å³
shell_volume	193770 Å³
envelope_diameter	200.9 Å
shell_rg	83.12 Å
envelope_rg	69.92 Å
shape_rg	75.21 Å
total_rg	75.18 Å
total_atoms	44836
n_residues	5720
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	210.1 Å
rg_real	74.59 Å
rg_real_error	1.13 Å
i0_real	5.4960e+09
i0_real_error	1.0630e+08
rg_reciprocal	75.84 Å
i0_reciprocal	5509000000.0000
total_estimate	0.8450
solution_quality	GOOD a GOOD solution
n_peaks	1
r_peak_primary	100.0 Å
skewness	-0.075
kurtosis	-0.837
angular_range	— – 0.1050 Å⁻¹
current_alpha	0.0002
highest_alpha	172300000.0000
n_real_points	22
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.997; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.991; Smooth: 0.000

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4. Crystallography & Experiment

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5. Entities & Polymer Info (2)

Entity 1 polymer

description	Prohibitin
formula_weight	28503.6 kDa
src_method	man
entity_count	11

Polymer

type	polypeptide(L)
strand_id	B,C,F,G,J,K,N,O,R,S,V
atom_count	44836

FIYQAAVPAAVGVGLLQASMYDVKGGTRAVIFDRLSGVKEQVVNEGTHFLIPWLQKAIIFDVRTKPRIIPTTTGSKDLQMVSLTLRVLHRPEVQALPKIYQNLGTDYDERVLPSIGNEVLKAIVAQYDAAELITQREVVSQRIRHDLTKRAREFNIALEDVSITHLTFGKEFTKAVEQKQIAQQDAERARFIVERAEQERQANVIRAEGEAEAAETISKAIAKAGDGLIQIRRLEASREIAQTLANNPNVVYLPGG

Source

organism	Thermochaetoides thermophila DSM 1495
ncbi_taxonomy_id	759272
host_organism	Saccharomyces cerevisiae

Entity 2 polymer

description	Prohibitin
formula_weight	29437.8 kDa
src_method	man
entity_count	11

Polymer

type	polypeptide(L)
strand_id	D,E,H,I,L,M,P,Q,T,U,W

ATLMLLGGTAFVFNSCLFNVEGGHRAIKYRRISGVSKDIYGEGTHFMIPWFETPIIYDVRAKPRNVSSLTGTKDLQMVNITCRVLSRPDIQALPQIYRTLGLDYDERVLPSIVNEVLKAVVAQFNASQLITQREMVARLVRENLAGRAARFNILLDDVSLTHLAFSPEFTAAVEAKQVAQQEAQRAAFIVDKARQEKQATVVKAQGEARAAELIGEAIKKNKAYVELKKLENARVIAQLLQESGKNRLLLDSEGLGLNVFEDQE

Source

organism	Thermochaetoides thermophila DSM 1495
ncbi_taxonomy_id	759272
host_organism	Saccharomyces cerevisiae

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6. Citations (1)

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length_a	1.000 Å
length_b	1.000 Å
length_c	1.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	—

space_group	P 1
int_tables_number	1
crystal_system	—

resolution	3.20 Å
resolution_method	—
num_particles	10623

fit	/app/data/saxs_computation/ur/9urz/9urz.fit
pddf	/app/data/pr_computation/ur/9urz/9urz.pr.out
profile	/app/data/saxs_computation/ur/9urz/9urz.dat

Cryo-EM structure of the Prohibitin complex from Chaetomium thermophilum

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

EM 3D

5. Entities & Polymer Info (2)

Entity 1 polymer

Polymer

Source

Entity 2 polymer

Polymer

Source

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)