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9uup

Glycogen phosphorylase from Segatella copri bound to glycogen-pentamer

Method: ELECTRON MICROSCOPY D_max: 178.6 Å Quality: GOOD

SAXS Profile

P(r) Distribution

P(r) distribution for 9uup

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1. Structure Basics

entry_id	9uup
deposition_date	2025-05-07
title	Glycogen phosphorylase from Segatella copri bound to glycogen-pentamer
keywords	glycogen metabolism, cryo-EM, gut bacteria, STRUCTURAL PROTEIN; STRUCTURAL PROTEIN
method	ELECTRON MICROSCOPY

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	65.33 Å
rg_electron	64.64 Å
i0	3327650000.00
molecular_weight	493090.0 kDa
excluded_volume	617660 Å³
envelope_volume	973900 Å³
shell_volume	121410 Å³
envelope_diameter	193.2 Å
shell_rg	73.50 Å
envelope_rg	60.59 Å
shape_rg	64.60 Å
total_rg	64.93 Å
total_atoms	34770
n_residues	4255
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	178.6 Å
rg_real	64.91 Å
rg_real_error	1.04 Å
i0_real	3.3280e+09
i0_real_error	5.9680e+07
rg_reciprocal	65.62 Å
i0_reciprocal	3331000000.0000
total_estimate	0.8458
solution_quality	GOOD a GOOD solution
n_peaks	1
r_peak_primary	104.2 Å
skewness	-0.049
kurtosis	-0.840
angular_range	— – 0.1200 Å⁻¹
current_alpha	0.0000
highest_alpha	109000000.0000
n_real_points	25
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.997; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 1.000; Smooth: 0.000

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4. Crystallography & Experiment

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5. Entities & Polymer Info (1)

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6. Citations (1)

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7. Files & Curves (10)