Crystal structure of beta 2 microglobulin in complex with antibody BBM.1

entry_id	9uvi
deposition_date	2025-05-10
title	Crystal structure of beta 2 microglobulin in complex with antibody BBM.1
keywords	IMMUNE SYSTEM; IMMUNE SYSTEM
method	X-RAY DIFFRACTION

rg_guinier	21.84 Å
rg_electron	21.03 Å
i0	22239700.00
molecular_weight	35983.0 kDa
excluded_volume	45014 ų
envelope_volume	53119 ų
shell_volume	21489 ų
envelope_diameter	80.7 Å
shell_rg	27.40 Å
envelope_rg	21.44 Å
shape_rg	21.00 Å
total_rg	21.95 Å
total_atoms	2539
n_residues	322
n_harmonics	20
q_range	— – 0.5000 Å−1
n_points	101
shell_type	directional
solvent_density	0.3340 e/ų
contrast_shell	0.0300 e/ų
crysol_version	4.1.3

dmax	78.6 Å
rg_real	21.80 Å
rg_real_error	0.56 Å
i0_real	2.2240e+07
i0_real_error	2.9690e+05
rg_reciprocal	21.81 Å
i0_reciprocal	22240000.0000
total_estimate	0.7739
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	25.8 Å
skewness	0.324
kurtosis	-0.288
angular_range	— – 0.3650 Å−1
current_alpha	0.0000
highest_alpha	8181000.0000
n_real_points	68
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.720; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.897; Smooth: 0.000

Unit Cell

length_a	59.990 Å
length_b	59.990 Å
length_c	187.810 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	8

Symmetry

space_group	P 41 21 2
int_tables_number	92
crystal_system	tetragonal

Refinement

resolution	2.500 Å
resolution_low	43.310 Å
r_factor	0.2018
r_work	0.1969
r_free	0.2457

Diffraction

temperature

126.2 K

Files (7)

• pr_distribution /app/data/pr_computation/uv/9uvi/pr_distribution.json
• pr_output /app/data/pr_computation/uv/9uvi/9uvi.pr.out
• pr_plot /app/data/visualization/pr_computation/uv/9uvi/9uvi_pr_distribution.png
• saxs_curve_dat /app/data/saxs_computation/uv/9uvi/9uvi.dat
• saxs_fit /app/data/saxs_computation/uv/9uvi/9uvi.fit
• saxs_log /app/data/saxs_computation/uv/9uvi/9uvi.log
• saxs_plot /app/data/visualization/saxs_computation/uv/9uvi/9uvi_saxs_profile.png

Curves (3)

fit	/app/data/saxs_computation/uv/9uvi/9uvi.fit
pddf	/app/data/pr_computation/uv/9uvi/9uvi.pr.out
profile	/app/data/saxs_computation/uv/9uvi/9uvi.dat