Crystal Structure of transaminase from Phaeobacter porticola

Method: X-RAY DIFFRACTION D_max: 92.8 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	9uvs
deposition_date	2025-05-11
last_revision	2026-04-29
title	Crystal Structure of transaminase from Phaeobacter porticola
keywords	transaminase, Phaeobacter porticola, TRANSFERASE; TRANSFERASE
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	28.36 Å
rg_electron	27.35 Å
i0	164666000.00
molecular_weight	100070.0 kDa
excluded_volume	124320 Å³
envelope_volume	142050 Å³
shell_volume	41542 Å³
envelope_diameter	96.6 Å
shell_rg	36.20 Å
envelope_rg	27.67 Å
shape_rg	27.35 Å
total_rg	28.09 Å
total_atoms	7036
n_residues	922
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	92.8 Å
rg_real	28.25 Å
rg_real_error	0.52 Å
i0_real	1.6470e+08
i0_real_error	2.4280e+06
rg_reciprocal	28.28 Å
i0_reciprocal	164700000.0000
total_estimate	0.8736
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	34.8 Å
skewness	0.322
kurtosis	-0.187
angular_range	— – 0.2800 Å⁻¹
current_alpha	0.0000
highest_alpha	53210000.0000
n_real_points	57
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.819; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.999; Smooth: 0.897

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4. Crystallography & Experiment

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5. Entities & Polymer Info (2)

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6. Citations (1)

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length_a	167.780 Å
length_b	60.410 Å
length_c	110.880 Å
angle_alpha	90.00 °
angle_beta	106.25 °
angle_gamma	90.00 °
z_pdb	8

space_group	C 1 2 1
int_tables_number	5
crystal_system	—

resolution	1.730 Å
resolution_low	29.860 Å
r_factor	0.1682
r_work	0.1668
r_free	0.1944

description	Aminotransferase class-III
formula_weight	50357.8 kDa
ec_number	2.6.1.-
src_method	man
entity_count	2

type	polypeptide(L)
strand_id	A,B
atom_count	8438

Crystal Structure of transaminase from Phaeobacter porticola

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (2)

Entity 1 polymer

Polymer

Source

Entity 2 water

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)

organism	Phaeobacter porticola
ncbi_taxonomy_id	1844006
host_organism	Escherichia coli

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	1402

fit	/app/data/saxs_computation/uv/9uvs/9uvs.fit
pddf	/app/data/pr_computation/uv/9uvs/9uvs.pr.out
profile	/app/data/saxs_computation/uv/9uvs/9uvs.dat