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9v0g

Helical structure of KomBC Complex

Method: ELECTRON MICROSCOPY D_max: 162.8 Å Quality: REASONABLE

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	9v0g
deposition_date	2025-05-17
title	Helical structure of KomBC Complex
keywords	Helical structure of KomB-KomC Complex, CELL INVASION; CELL INVASION
method	ELECTRON MICROSCOPY

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	52.08 Å
rg_electron	51.58 Å
i0	2342980000.00
molecular_weight	408430.0 kDa
excluded_volume	513110 Å³
envelope_volume	707820 Å³
shell_volume	113060 Å³
envelope_diameter	167.7 Å
shell_rg	56.30 Å
envelope_rg	50.77 Å
shape_rg	51.54 Å
total_rg	51.86 Å
total_atoms	28816
n_residues	3656
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	162.8 Å
rg_real	52.77 Å
rg_real_error	0.44 Å
i0_real	2.2990e+09
i0_real_error	3.7740e+07
rg_reciprocal	52.20 Å
i0_reciprocal	2344000000.0000
total_estimate	0.7060
solution_quality	REASONABLE a REASONABLE solution
n_peaks	1
r_peak_primary	59.7 Å
skewness	0.290
kurtosis	-0.279
angular_range	— – 0.1500 Å⁻¹
current_alpha	1.6350
highest_alpha	192800000.0000
n_real_points	31
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.942; Stabil: 0.927; Sysdev: 0.000; Positv: 1.000; Valcen: 0.968; Smooth: 0.620

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4. Crystallography & Experiment

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5. Entities & Polymer Info (2)

Entity 1 polymer

description	Xanthosine/inosine triphosphate pyrophosphatase
formula_weight	20012.0 kDa
src_method	man
entity_count	8

Polymer

type	polypeptide(L)
strand_id	A,B,L,K,I,J,C,D
atom_count	28816

MAPTWFYNTTNSEKLRELQHVLGGSAKLGYLTAKVTEILDVDLETVIRAKAIAAYRAVRVPVIVEHGALCIDALNGLPGALVKPFWESLDTRLCEVIPAGQRTARARGALCYCDGRERHVLIEETEGEIAPSARGTGGFHWDPIFIPKGQTRTFAEMSLDEKLSFSPLGRLHTRLRTELGL

Source

organism	Archangium gephyra
ncbi_taxonomy_id	48
host_organism	Escherichia coli

Entity 2 polymer

description	NAD-dependent protein deacetylase
formula_weight	31370.7 kDa
src_method	man
entity_count	8

Polymer

type	polypeptide(L)
strand_id	E,G,F,H,M,P,N,O

MTTLTLSEAAPLLKKEFREGRLIPFLGAGFSKPLKLPDGSQLIASLAKTLGFEPELFDMHGRFEQLAEFFAISAPNRLQRLVYEMSLSFDSAEAEALREKSPMHRALAALDWRTIYTTNYDKHVEGALRDAGKQAAVLASFADFQGPRARDVCEVIKFHGTLDQPDTIVLTESSYFQRMALDAPPDQRLRADLLANSFLFIGYSFSDTNIRYIWYRMNQLREQSQLGVKHSQARRCFFATHGAGLVQPDILQQWNIDVIQLDPTDKSASVARLLESIA

Source

organism	Archangium gephyra
ncbi_taxonomy_id	48
host_organism	Escherichia coli

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6. Citations (1)

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resolution	2.46 Å
resolution_method	—
num_particles	7198

fit	/app/data/saxs_computation/v0/9v0g/9v0g.fit
pddf	/app/data/pr_computation/v0/9v0g/9v0g.pr.out
profile	/app/data/saxs_computation/v0/9v0g/9v0g.dat

Helical structure of KomBC Complex

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

EM 3D

5. Entities & Polymer Info (2)

Entity 1 polymer

Polymer

Source

Entity 2 polymer

Polymer

Source

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)