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9v60

Crystal structure of myrcene synthase

Method: X-RAY DIFFRACTION D_max: 121.1 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	9v60
deposition_date	2025-05-26
last_revision	2026-06-03
title	Crystal structure of myrcene synthase
keywords	myrcene synthase, myrcene, monoterpene, LYASE; LYASE
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	36.74 Å
rg_electron	36.37 Å
i0	234113000.00
molecular_weight	126920.0 kDa
excluded_volume	160030 Å³
envelope_volume	209080 Å³
shell_volume	48080 Å³
envelope_diameter	123.9 Å
shell_rg	42.47 Å
envelope_rg	35.95 Å
shape_rg	36.35 Å
total_rg	36.86 Å
total_atoms	8946
n_residues	1070
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	121.1 Å
rg_real	36.77 Å
rg_real_error	0.90 Å
i0_real	2.3410e+08
i0_real_error	3.7680e+06
rg_reciprocal	36.75 Å
i0_reciprocal	234100000.0000
total_estimate	0.8838
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	36.6 Å
skewness	0.319
kurtosis	-0.577
angular_range	— – 0.2150 Å⁻¹
current_alpha	0.0000
highest_alpha	48860000.0000
n_real_points	44
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.877; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.956; Smooth: 0.898

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4. Crystallography & Experiment

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5. Entities & Polymer Info (3)

Entity 1 polymer

description	Myrcene synthase TPS3FN, chloroplastic
formula_weight	65961.1 kDa
ec_number	4.2.3.15
src_method	man
entity_count	2

Polymer

type	polypeptide(L)
strand_id	A,B
atom_count	9052

EPPIWSFDYIQSLSTQYKGESYTRQLNKLKKEVKRMLLRMEINSLALLELIDTLQRLGISYHFKNEINTILKKKYNDNYINNNIITNPNYNNLYATALEFRLLRQHGYTVPQEIFNAFKDKRGKFKTSLSDDIMGVLCLYEASFYAMKHENILEEARIFSTKCLKKYMEKIENEEEKKILLLNDNNINSNLLLINHAFELPLHWRITRSEARWFIDEIYEKKQDMNSTLFEFAKLDFNIVQSTHQEDLQHLSRWWRDCKLGGKLNFARDRLMEAFLWDVGLKFEGEFSYFRRTNARLFVLITIIDDIYDVYGTLEELELFTSAVERWDVKLINELPDYMKMPFFVLHNTINEMGFDVLVEQNFVNIEYLKKSWVDLCKCYLQEAKWYYSGYQPTLEEYTELGWLSIGASVILMHAYFCFTNPITKQDLKSLQLQHHYPNIIKQACLITRLADDLGTSSDELNRGDVPKSIQCYMYDNNATEDEAREHIKFLISETWKDMNKKDEDESCLSENFVEVCKNMARTALFIYENGDGHGSQNSLSKERISTLIITPINIPK

Source

organism	Cannabis sativa
ncbi_taxonomy_id	3483
host_organism	Escherichia coli

Entity 2 non-polymer

description	MAGNESIUM ION
formula_weight	24.3 kDa
src_method	syn
entity_count	2

Entity 3 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	95

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6. Citations (1)

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length_a	124.826 Å
length_b	124.826 Å
length_c	193.740 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	120.00 °
z_pdb	12

space_group	P 32 2 1
int_tables_number	154
crystal_system	—

resolution	2.610 Å
resolution_low	44.200 Å
r_factor	0.2257
r_work	0.2247
r_free	0.2496

fit	/app/data/saxs_computation/v6/9v60/9v60.fit
pddf	/app/data/pr_computation/v6/9v60/9v60.pr.out
profile	/app/data/saxs_computation/v6/9v60/9v60.dat

Crystal structure of myrcene synthase

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction