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9v6k

Crystal structure of alcohol oxidase PcAOX(M59V/Q60P/R61N)(Phanerochaete chrysosporium)

Method: X-RAY DIFFRACTION D_max: 125.5 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	9v6k
deposition_date	2025-05-27
last_revision	2026-06-03
title	Crystal structure of alcohol oxidase PcAOX(M59V/Q60P/R61N)(Phanerochaete chrysosporium)
keywords	oxidoreductase; OXIDOREDUCTASE
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	37.50 Å
rg_electron	37.65 Å
i0	312244000.00
molecular_weight	140340.0 kDa
excluded_volume	173980 Å³
envelope_volume	212480 Å³
shell_volume	48868 Å³
envelope_diameter	131.0 Å
shell_rg	42.06 Å
envelope_rg	37.59 Å
shape_rg	37.59 Å
total_rg	38.10 Å
total_atoms	9876
n_residues	1245
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	125.5 Å
rg_real	37.83 Å
rg_real_error	1.02 Å
i0_real	3.1220e+08
i0_real_error	5.3850e+06
rg_reciprocal	37.63 Å
i0_reciprocal	312200000.0000
total_estimate	0.8253
solution_quality	GOOD a GOOD solution
n_peaks	1
r_peak_primary	32.9 Å
skewness	0.526
kurtosis	-0.411
angular_range	— – 0.2100 Å⁻¹
current_alpha	0.0000
highest_alpha	148500000.0000
n_real_points	43
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.742; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.907; Smooth: 0.592

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4. Crystallography & Experiment

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5. Entities & Polymer Info (4)

Entity 1 polymer

description	Alcohol oxidase
formula_weight	73321.6 kDa
ec_number	1.1.3.13
mutation	M59V,Q60P,R61N
src_method	man
entity_count	2

Polymer

type	polypeptide(L)
strand_id	A,B
atom_count	9950

EFEFMGHPEEVDVIVCGGGPAGCVVAGRLAYADPTLKVMLIEGGANNRDDPWVYRPGIYVRNVPNNGINDKATFYTDTMASSYLRGRRSIVPCANILGGGSSINFQMYTRASASDWDDFKTEGWTCKDLLPLMKRLENYQKPCNNDTHGYDGPIAISNGGQIMPVAQDFLRAAHAIGVPYSDDIQDLTTAHGAEIWAKYINRHTGRRSDAATAYVHSVMDVQDNLFLRCNARVSRVLFDDNNKAVGVAYVPSRNRTHGGKLHETIVKARKMVVLSSGTLGTPQILERSGVGNGELLRQLGIKIVSDLPGVGEQYQDHYTTLSIYRVSNESITTDDFLRGVKDVQRELFTEWEVSPEKARLSSNAIDAGFKIRPTEEELKEMGPEFNELWNRYFKDKPDKPVMFGSIVAGAYADHTLLPPGKYITMFQYLEYPASRGKIHIKSQNPYVEPFFDSGFMNNKADFAPIRWSYKKTREVARRMDAFRGELTSHHPRFHPASPAACKDIDIETAKQIYPDGLTVGIHMGSWHQPSEPYKHDKVIEDIPYTEEDDKAIDDWVADHVETTWHSLGTCAMKPREQGGVVDKRLNVYGTQNLKCVDLSICPDNLGTNTYSSALLVGEKGADLIAEELGLKIKTPHAPVPHAPVPTGRPATQQVRLE

Source

organism	Phanerodontia chrysosporium
ncbi_taxonomy_id	2822231
host_organism	Escherichia coli

Entity 2 non-polymer

description	FLAVIN-ADENINE DINUCLEOTIDE
formula_weight	785.5 kDa
src_method	syn
entity_count	2

Entity 3 non-polymer

description	SULFATE ION
formula_weight	96.1 kDa
src_method	syn
entity_count	2

Entity 4 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	67

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6. Citations (1)

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length_a	161.260 Å
length_b	161.260 Å
length_c	113.340 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	16

space_group	P 4 21 2
int_tables_number	90
crystal_system	tetragonal

resolution	2.900 Å
resolution_low	23.180 Å
r_factor	0.1730
r_work	0.1695
r_free	0.2296

fit	/app/data/saxs_computation/v6/9v6k/9v6k.fit
pddf	/app/data/pr_computation/v6/9v6k/9v6k.pr.out
profile	/app/data/saxs_computation/v6/9v6k/9v6k.dat

Crystal structure of alcohol oxidase PcAOX(M59V/Q60P/R61N)(Phanerochaete chrysosporium)

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction