9v9e
Cryo-EM structure of human RIPK1 DD filament
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9v9e |
| deposition_date | 2025-05-30 |
| title | Cryo-EM structure of human RIPK1 DD filament |
| keywords | Death doamin, PROTEIN FIBRIL; PROTEIN FIBRIL |
| method | ELECTRON MICROSCOPY |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 40.45 Å |
| rg_electron | 40.30 Å |
| i0 | 811454000.00 |
| molecular_weight | 231850.0 kDa |
| excluded_volume | 289780 ų |
| envelope_volume | 384170 ų |
| shell_volume | 76795 ų |
| envelope_diameter | 145.2 Å |
| shell_rg | 47.72 Å |
| envelope_rg | 40.09 Å |
| shape_rg | 40.30 Å |
| total_rg | 40.71 Å |
| total_atoms | 16300 |
| n_residues | 2000 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 132.4 Å |
| rg_real | 40.39 Å |
| rg_real_error | 0.98 Å |
| i0_real | 8.1150e+08 |
| i0_real_error | 1.4030e+07 |
| rg_reciprocal | 40.45 Å |
| i0_reciprocal | 811500000.0000 |
| total_estimate | 0.8710 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 2 |
| r_peak_primary | 44.1 Å |
| skewness | 0.357 |
| kurtosis | -0.283 |
| angular_range | — – 0.1950 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 317100000.0000 |
| n_real_points | 40 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.832; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.999; Smooth: 0.824 |