9vam
Cryo-EM structure of oat globulin fibril, Type 1
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9vam |
| deposition_date | 2025-06-03 |
| title | Cryo-EM structure of oat globulin fibril, Type 1 |
| keywords | PROTEIN FIBRIL, amyloid, oat globulin; PROTEIN FIBRIL |
| method | ELECTRON MICROSCOPY |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 17.62 Å |
| rg_electron | 16.67 Å |
| i0 | 3107180.00 |
| molecular_weight | 12110.0 kDa |
| excluded_volume | 15050 ų |
| envelope_volume | 19134 ų |
| shell_volume | 10732 ų |
| envelope_diameter | 59.7 Å |
| shell_rg | 20.96 Å |
| envelope_rg | 16.90 Å |
| shape_rg | 16.59 Å |
| total_rg | 17.72 Å |
| total_atoms | 852 |
| n_residues | 105 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 61.9 Å |
| rg_real | 17.74 Å |
| rg_real_error | 0.44 Å |
| i0_real | 3.1070e+06 |
| i0_real_error | 3.6960e+04 |
| rg_reciprocal | 17.72 Å |
| i0_reciprocal | 3107000.0000 |
| total_estimate | 0.8566 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 2 |
| r_peak_primary | 20.6 Å |
| skewness | 0.484 |
| kurtosis | -0.103 |
| angular_range | — – 0.4500 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 363900.0000 |
| n_real_points | 76 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.791; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.783; Smooth: 0.975 |