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9vbm

Cryo-EM structure of glycogen phosphorylase from Dorea longicatena (dimer form)

Method: ELECTRON MICROSCOPY D_max: 83.4 Å Quality: EXCELLENT

SAXS Profile

P(r) Distribution

P(r) distribution for 9vbm

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1. Structure Basics

entry_id	9vbm
deposition_date	2025-06-04
title	Cryo-EM structure of glycogen phosphorylase from Dorea longicatena (dimer form)
keywords	glycogen phosphorylase, TRANSFERASE; TRANSFERASE
method	ELECTRON MICROSCOPY

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	27.73 Å
rg_electron	26.57 Å
i0	113926000.00
molecular_weight	85899.0 kDa
excluded_volume	108240 Å³
envelope_volume	129370 Å³
shell_volume	38940 Å³
envelope_diameter	86.4 Å
shell_rg	35.40 Å
envelope_rg	26.61 Å
shape_rg	26.57 Å
total_rg	27.47 Å
total_atoms	6052
n_residues	750
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	83.4 Å
rg_real	27.54 Å
rg_real_error	0.45 Å
i0_real	1.1390e+08
i0_real_error	1.6420e+06
rg_reciprocal	27.60 Å
i0_reciprocal	113900000.0000
total_estimate	0.9082
solution_quality	EXCELLENT a EXCELLENT solution
n_peaks	2
r_peak_primary	35.1 Å
skewness	0.149
kurtosis	-0.499
angular_range	— – 0.2850 Å⁻¹
current_alpha	0.0000
highest_alpha	43440000.0000
n_real_points	58
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.948; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.983; Smooth: 0.975

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4. Crystallography & Experiment

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5. Entities & Polymer Info (1)

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6. Citations (1)

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7. Files & Curves (10)