SAXSdb — 9vc7

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1. Protein Identity and Related Structures Protein Identity & Related Structures

Zinc finger MYND domain-containing protein 11

Homo sapiens

State in the Current Structure

Assembly	Physical composition	Protein state	Molecular copy count	Associated components	Data consistency
1	Protein homooligomer	Homooligomer	Protein 8	ZINC ION × 16	Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence

UniProt name	ZMY11_HUMAN
Isoform	—
PDB entities	1
Chains and sequence ranges	Author chain A； PDBConstruct 1–122； UniProt 481–602 Author chain B； PDBConstruct 1–122； UniProt 481–602 Author chain C； PDBConstruct 1–122； UniProt 481–602 Author chain D； PDBConstruct 1–122； UniProt 481–602

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id	9vc7
Deposition date deposition_date	2025-06-05
Last revision last_revision	2026-01-14
Structure title title	Structural insights into the tumor suppressor ZMYND11 reveal diverse recognition mechanisms
Keywords keywords	tumor, zinc finger, TRANSCRIPTION; TRANSCRIPTION
Experimental Method method	X-RAY DIFFRACTION

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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

9vc7__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

9vc7__assembly_1__model_1 | I(q)

100 plotted points; both axes use logarithmic scales.

9vc7__assembly_1__model_1 | P(r) · Pending

P(r) will be calculated and displayed separately for the same assembly/model.

Rg（Guinier）	79.47 Å
Rg (electron density)	80.09 Å
Total Rg	79.69 Å
Atom count	14864
Residues	902
Excluded volume	132770 Å³
Maximum q	0.500 Å⁻¹

Assembly	Model	Structure unit	Oligomeric description	Status	CRYSOL	Actions
1	1	`9vc7__assembly_1__model_1`	octameric （8）	Success	4.1.3-1-20251215 (887e7ef)	View Download

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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (2)

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Unit-cell length a length_a	70.140 Å
Unit-cell length b length_b	75.950 Å
Unit-cell length c length_c	172.180 Å
Unit-cell angle α angle_alpha	90.00 °
Unit-cell angle β angle_beta	90.00 °
Unit-cell angle γ angle_gamma	90.00 °
Molecules per unit cell Z z_pdb	16

Space group space_group	P 21 21 21
Space-group number int_tables_number	19
Crystal system crystal_system	—

Resolution resolution	3.350 Å
Low-resolution limit resolution_low	37.080 Å
R factor r_factor	0.2447
R_work r_work	0.2438
R_free r_free	0.2624

Description description	Zinc finger MYND domain-containing protein 11
Molecular weight formula_weight	14985.3 kDa
Source method src_method	man
Copy count entity_count	4

Polymer type type	polypeptide(L)
Chain IDs strand_id	A,B,C,D
Atom count atom_count	7432

Structural insights into the tumor suppressor ZMYND11 reveal diverse recognition mechanisms

1. Protein Identity and Related Structures Protein Identity & Related Structures

Zinc finger MYND domain-containing protein 11

State in the Current Structure

Other States of the Same Protein in the Database

2. Structure Basics 2. Structure Basics

3. Official assembly/model SAXS Official SAXS Profiles

9vc7__assembly_1__model_1

9vc7__assembly_1__model_1 | I(q)

9vc7__assembly_1__model_1 | P(r) · Pending

4. Crystallography and Experiment 4. Crystallography & Experiment

Unit cell Unit Cell

Symmetry Symmetry

Refinement Refinement

Diffraction experiment Diffraction

5. Entities and Polymers Entities & Polymers (2)

Entity 1 Entity 1 polymer

Polymer Polymer

Source Source

Entity 2 Entity 2 non-polymer

7. Citations (1)

Source organism organism	Homo sapiens
Common name common_name	human
NCBI taxonomy ID ncbi_taxonomy_id	9606
Host organism host_organism	Escherichia coli

Description description	ZINC ION
Molecular weight formula_weight	65.4 kDa
Source method src_method	syn
Copy count entity_count	8

Structural insights into the tumor suppressor ZMYND11 reveal diverse recognition mechanisms

1. Protein Identity and Related Structures Protein Identity & Related Structures

Zinc finger MYND domain-containing protein 11

State in the Current Structure

Other States of the Same Protein in the Database

Monomer

Homodimer

Homotetramer

Other homooligomers

Heteromeric or nucleic-acid complex

2. Structure Basics 2. Structure Basics

3. Official assembly/model SAXS Official SAXS Profiles

9vc7__assembly_1__model_1

9vc7__assembly_1__model_1 | I(q)

9vc7__assembly_1__model_1 | P(r) · Pending

4. Crystallography and Experiment 4. Crystallography & Experiment

Unit cell Unit Cell

Symmetry Symmetry

Refinement Refinement

Diffraction experiment Diffraction

5. Entities and Polymers Entities & Polymers (2)

Entity 1 Entity 1 polymer

Polymer Polymer

Source Source

Entity 2 Entity 2 non-polymer

7. Citations (1)