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9vim

Zea mays URE transporter DUR3 - URE bound

Method: ELECTRON MICROSCOPY D_max: 147.2 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	9vim
deposition_date	2025-06-18
title	Zea mays URE transporter DUR3 - URE bound
keywords	URE transporter, homomeric tetramer, CHOLINE-BINDING PROTEIN; CHOLINE-BINDING PROTEIN
method	ELECTRON MICROSCOPY

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	48.68 Å
rg_electron	47.73 Å
i0	853492000.00
molecular_weight	261150.0 kDa
excluded_volume	334670 Å³
envelope_volume	489770 Å³
shell_volume	84839 Å³
envelope_diameter	155.4 Å
shell_rg	53.68 Å
envelope_rg	45.32 Å
shape_rg	47.72 Å
total_rg	48.01 Å
total_atoms	18404
n_residues	2474
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	147.2 Å
rg_real	48.23 Å
rg_real_error	1.12 Å
i0_real	8.5350e+08
i0_real_error	1.7240e+07
rg_reciprocal	48.68 Å
i0_reciprocal	854000000.0000
total_estimate	0.8604
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	69.0 Å
skewness	-0.061
kurtosis	-0.469
angular_range	— – 0.1600 Å⁻¹
current_alpha	0.0000
highest_alpha	74690000.0000
n_real_points	33
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.833; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.966; Smooth: 0.715

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4. Crystallography & Experiment

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5. Entities & Polymer Info (2)

Entity 1 polymer

description	Urea-proton symporter DUR3
formula_weight	82153.9 kDa
src_method	man
entity_count	4

Polymer

type	polypeptide(L)
strand_id	A,B,C,D
atom_count	18404

MAAGGAGACPPPGLGFGGEYYSVVDGACSRDGSFFGGKPVLAQAVGYAVVLGFGAFFALFTSFLVWLEKRYVGSQHTSEWFNTAGRSVKTGLIASVIVSQWTWAATILQSSNVAWQYGVSGPFWYASGATIQVLLFGVMAIEIKRKAPKAHTVCEIVRARWGRAAHAVFLAFCLATNVIVTAMLLLGGSAVVNALTAINVYAASFLIPLGVVVYTLAGGLKATFLASYIHSVVVHVVLVVFVFLVYTSGNRLGSPRVVHDHLTAVASAVRNCSAPLSHPDQACGPVHGNFKGSYLTMLSSGGLVFGIINIVGNFGTVFVDNGYWMSAIAARPSSTHKGYLLGGLVWFAVPFSLATSLGLGALALDLPITAAEAAKGLVPAATATALMGKSGSVLLLIMLFMAVTSAGSAELVAVSSLCTYDIYRTYINPDATGEQILRVSRATVLVFGCLMGVLAVILNLVGVSLGWLYLAMGVIIGSAVIPIALLLLWRKANALGAILGAVSGCVLGVTVWLSVAKVQYGRVDLDSTGRNAPMLAGNLVSILVGGAVHAACSLAWPQHYDWESSRQITTVESVPADSDLAEELKEERLVHAKRWIIKWGVAFTAVIAVVWPVLSLPAGRYSAGYFTMWAVIAIAWGTVGSAVIIFLPLVESWDTICKVCEGMFTNNAVYERLDEMNLRLKAIMGDMPEAEERYQEMQKEKDLGTMEMVHPASGTRPSIVANDDEDNLSLAVDELTSRGRDYKDDDDKWSHPQFEKGGGGSGGSAWSHPQFEK

Source

organism	Zea mays
common_name	Maize
ncbi_taxonomy_id	4577
host_organism	Homo sapiens

Entity 2 non-polymer

description	UREA
formula_weight	60.1 kDa
src_method	syn
entity_count	1

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6. Citations (1)

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length_a	1.000 Å
length_b	1.000 Å
length_c	1.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	—

space_group	P 1
int_tables_number	1
crystal_system	—

resolution	3.410 Å
resolution_low	— Å
r_factor	—
r_work	—
r_free	—

resolution	3.41 Å
resolution_method	—
num_particles	248055

fit	/app/data/saxs_computation/vi/9vim/9vim.fit
pddf	/app/data/pr_computation/vi/9vim/9vim.pr.out
profile	/app/data/saxs_computation/vi/9vim/9vim.dat

Zea mays URE transporter DUR3 - URE bound

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

EM 3D

5. Entities & Polymer Info (2)

Entity 1 polymer

Polymer

Source

Entity 2 non-polymer

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)