Bacteroides fragilis NCTC9343 T6SS Hcp2-Hcp3 heterohexamer complex

entry_id	9vne
deposition_date	2025-06-30
title	Bacteroides fragilis NCTC9343 T6SS Hcp2-Hcp3 heterohexamer complex
keywords	Bacteroides fragilis, T6SS, Hcp, STRUCTURAL PROTEIN; STRUCTURAL PROTEIN
method	ELECTRON MICROSCOPY

rg_guinier	31.03 Å
rg_electron	30.02 Å
i0	54405200.00
molecular_weight	59831.0 kDa
excluded_volume	75900 ų
envelope_volume	110630 ų
shell_volume	30148 ų
envelope_diameter	88.4 Å
shell_rg	38.35 Å
envelope_rg	28.48 Å
shape_rg	30.00 Å
total_rg	31.02 Å
total_atoms	4216
n_residues	526
n_harmonics	20
q_range	— – 0.5000 Å−1
n_points	101
shell_type	directional
solvent_density	0.3340 e/ų
contrast_shell	0.0300 e/ų
crysol_version	4.1.3

dmax	89.2 Å
rg_real	30.84 Å
rg_real_error	0.53 Å
i0_real	5.4410e+07
i0_real_error	7.8070e+05
rg_reciprocal	30.93 Å
i0_reciprocal	54410000.0000
total_estimate	0.9056
solution_quality	EXCELLENT a EXCELLENT solution
n_peaks	3
r_peak_primary	49.0 Å
skewness	-0.072
kurtosis	-0.874
angular_range	— – 0.2550 Å−1
current_alpha	0.0000
highest_alpha	23660000.0000
n_real_points	52
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.932; Stabil: 0.999; Sysdev: 1.000; Positv: 1.000; Valcen: 0.997; Smooth: 0.977

Unit Cell

length_a	1.000 Å
length_b	1.000 Å
length_c	1.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	—

Symmetry

space_group	P 1
int_tables_number	1
crystal_system	—

Refinement

resolution	3.110 Å
resolution_low	— Å
r_factor	—
r_work	—
r_free	—

EM 3D

resolution	3.11 Å
resolution_method	—
num_particles	501091

Files (7)

• pr_distribution /app/data/pr_computation/vn/9vne/pr_distribution.json
• pr_output /app/data/pr_computation/vn/9vne/9vne.pr.out
• pr_plot /app/data/visualization/pr_computation/vn/9vne/9vne_pr_distribution.png
• saxs_curve_dat /app/data/saxs_computation/vn/9vne/9vne.dat
• saxs_fit /app/data/saxs_computation/vn/9vne/9vne.fit
• saxs_log /app/data/saxs_computation/vn/9vne/9vne.log
• saxs_plot /app/data/visualization/saxs_computation/vn/9vne/9vne_saxs_profile.png

Curves (3)

fit	/app/data/saxs_computation/vn/9vne/9vne.fit
pddf	/app/data/pr_computation/vn/9vne/9vne.pr.out
profile	/app/data/saxs_computation/vn/9vne/9vne.dat