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9vod

Crystal strucrue of HuHF-C2-Cur complex 1

Method: X-RAY DIFFRACTION D_max: 67.5 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	9vod
deposition_date	2025-07-01
last_revision	2026-06-10
title	Crystal strucrue of HuHF-C2-Cur complex 1
keywords	Ferritin variant, METAL BINDING PROTEIN; METAL BINDING PROTEIN
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	19.36 Å
rg_electron	18.46 Å
i0	7469430.00
molecular_weight	19526.0 kDa
excluded_volume	24207 Å³
envelope_volume	28902 Å³
shell_volume	14091 Å³
envelope_diameter	67.1 Å
shell_rg	23.34 Å
envelope_rg	18.82 Å
shape_rg	18.42 Å
total_rg	19.38 Å
total_atoms	1388
n_residues	172
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	67.5 Å
rg_real	19.49 Å
rg_real_error	0.62 Å
i0_real	7.4690e+06
i0_real_error	1.0490e+05
rg_reciprocal	19.47 Å
i0_reciprocal	7469000.0000
total_estimate	0.8296
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	19.0 Å
skewness	0.484
kurtosis	-0.325
angular_range	— – 0.4100 Å⁻¹
current_alpha	0.0000
highest_alpha	1765000.0000
n_real_points	72
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.678; Stabil: 0.999; Sysdev: 1.000; Positv: 1.000; Valcen: 0.756; Smooth: 0.991

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4. Crystallography & Experiment

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5. Entities & Polymer Info (6)

Entity 1 polymer

description	Ferritin heavy chain, N-terminally processed
formula_weight	20067.4 kDa
mutation	E28A/Y35A/Y55A/H58A/Q59A/E62A/E63A/H66A/K69A/K87Q/E108A/H137A/Y138A/E141A/Q142A/K144A/E148A
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	A
atom_count	1671

TTASTSQVRQNYHQDSEAAINRQINLALYASYVALSMSYYFDRDDVALKNFAKAFLAASHAAREAAEALMKLQNQRGGRIFLQDIQKPDCDDWESGLNAMECALHLAKNVNQSLLELHKLATDKNDPHLCDFIETAALNAAVAAIKALGDHVTNLRKMGAPESGLAEYLFDKHTLGDSDNES

Source

organism	Homo sapiens
common_name	human
ncbi_taxonomy_id	9606
host_organism	Escherichia coli

Entity 2 non-polymer

description	curcumin
formula_weight	368.4 kDa
src_method	syn
entity_count	1

Entity 3 non-polymer

description	MAGNESIUM ION
formula_weight	24.3 kDa
src_method	syn
entity_count	2

Entity 4 non-polymer

description	CALCIUM ION
formula_weight	40.1 kDa
src_method	syn
entity_count	1

Entity 5 non-polymer

description	FE (III) ION
formula_weight	55.8 kDa
src_method	syn
entity_count	1

Entity 6 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	269

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6. Citations (1)

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length_a	183.538 Å
length_b	183.538 Å
length_c	183.538 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	96

space_group	F 4 3 2
int_tables_number	209
crystal_system	—

resolution	1.920 Å
resolution_low	19.570 Å
r_factor	0.1572
r_work	0.1533
r_free	0.1923

fit	/app/data/saxs_computation/vo/9vod/9vod.fit
pddf	/app/data/pr_computation/vo/9vod/9vod.pr.out
profile	/app/data/saxs_computation/vo/9vod/9vod.dat