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9vrd

Cryo-EM structure of rice multidrug resistance protein 5 (MRP5) with InsP6 in state A

Method: ELECTRON MICROSCOPY Dmax: 127.4 Å Quality: GOOD

SAXS Profile

SAXS profile for 9vrd

P(r) Distribution

P(r) distribution for 9vrd
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1. Structure Basics

entry_id9vrd
deposition_date2025-07-06
titleCryo-EM structure of rice multidrug resistance protein 5 (MRP5) with InsP6 in state A
keywordsABC-type transporter, Monomer, TRANSPORT PROTEIN; TRANSPORT PROTEIN
methodELECTRON MICROSCOPY
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Download Data

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2. SAXS Parameters (CRYSOL)

rg_guinier39.20 Å
rg_electron39.07 Å
i0228010000.00
molecular_weight127270.0 kDa
excluded_volume161390 ų
envelope_volume221660 ų
shell_volume47947 ų
envelope_diameter131.1 Å
shell_rg44.47 Å
envelope_rg38.11 Å
shape_rg39.09 Å
total_rg39.36 Å
total_atoms8938
n_residues1136
n_harmonics20
q_range— – 0.5000 Å−1
n_points101
shell_typedirectional
solvent_density0.3340 e/ų
contrast_shell0.0300 e/ų
crysol_version4.1.3
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3. P(r) Analysis (GNOM)

dmax127.4 Å
rg_real39.15 Å
rg_real_error0.96 Å
i0_real2.2800e+08
i0_real_error3.8000e+06
rg_reciprocal39.19 Å
i0_reciprocal228000000.0000
total_estimate0.8998
solution_quality GOOD a GOOD solution
n_peaks1
r_peak_primary51.0 Å
skewness0.194
kurtosis-0.626
angular_range— – 0.2000 Å−1
current_alpha0.0000
highest_alpha28410000.0000
n_real_points41
gnom_version4.1.3
quality_criteria AN1: 0.000; Oscil: 0.937; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.981; Smooth: 0.901
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4. Crystallography & Experiment

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5. Entities & Polymer Info (2)

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6. Citations (1)

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7. Files & Curves (10)