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9vvu

Crystal structure of the LysR-type transcriptional regulator CutR from mycobacterium sp. strain JC1

Method: X-RAY DIFFRACTION D_max: 83.6 Å Quality: EXCELLENT

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	9vvu
deposition_date	2025-07-16
last_revision	2026-05-27
title	Crystal structure of the LysR-type transcriptional regulator CutR from mycobacterium sp. strain JC1
keywords	LysR family transcriptional regulator, TRANSCRIPTION; TRANSCRIPTION
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	26.83 Å
rg_electron	25.78 Å
i0	75982500.00
molecular_weight	68332.0 kDa
excluded_volume	85864 Å³
envelope_volume	105060 Å³
shell_volume	33505 Å³
envelope_diameter	87.2 Å
shell_rg	33.59 Å
envelope_rg	25.68 Å
shape_rg	25.76 Å
total_rg	26.67 Å
total_atoms	4805
n_residues	642
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	83.6 Å
rg_real	26.69 Å
rg_real_error	0.29 Å
i0_real	7.5980e+07
i0_real_error	9.5360e+05
rg_reciprocal	26.74 Å
i0_reciprocal	75980000.0000
total_estimate	0.9042
solution_quality	EXCELLENT a EXCELLENT solution
n_peaks	1
r_peak_primary	34.0 Å
skewness	0.170
kurtosis	-0.468
angular_range	— – 0.2950 Å⁻¹
current_alpha	0.0001
highest_alpha	28590000.0000
n_real_points	60
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.925; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.998; Smooth: 0.979

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4. Crystallography & Experiment

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5. Entities & Polymer Info (4)

Entity 1 polymer

description	LysR family transcriptional regulator
formula_weight	34217.4 kDa
src_method	man
entity_count	2

Polymer

type	polypeptide(L)
strand_id	A,B
atom_count	5209

MTPAQLRAFASVVRLGSVRAAAEELGMSDAGISMHVAQLRKELDDPLFSRTSSGLAFTPGGLRLASRAVEILGLQQQTAIEVNEASRGRRLLRIAASSGFAEHAAPGLIELFSSRAKDLSVELSVHSPGRFKDLVVSRAVDIALGPVAGPIDDESITVRPFLQYHVLTVAAPGNPAATSVPAPLSLLREQQWMLGPSASNVDGEIGSVLRALAIPEARQRIFQNDAAALEELQRAKAVTLAIGITVAKDLEAGRLVHVKGPGLQTPGEWCAMTLTPAARQPAVSELVRFITTPRCTQAMLRGTGVGVRRFKPKIHVTLWSL

Source

organism	Mycobacterium sp. DSM 3803
ncbi_taxonomy_id	212194
host_organism	Escherichia coli BL21(DE3)

Entity 2 non-polymer

description	1,2-ETHANEDIOL
formula_weight	62.1 kDa
src_method	syn
entity_count	2

Entity 3 non-polymer

description	GLYCEROL
formula_weight	92.1 kDa
src_method	syn
entity_count	1

Entity 4 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	398

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6. Citations (1)

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length_a	69.933 Å
length_b	81.809 Å
length_c	101.061 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	8

space_group	P 21 21 21
int_tables_number	19
crystal_system	—

resolution	1.800 Å
resolution_low	36.620 Å
r_factor	0.1921
r_work	0.1905
r_free	0.2334

fit	/app/data/saxs_computation/vv/9vvu/9vvu.fit
pddf	/app/data/pr_computation/vv/9vvu/9vvu.pr.out
profile	/app/data/saxs_computation/vv/9vvu/9vvu.dat

Crystal structure of the LysR-type transcriptional regulator CutR from mycobacterium sp. strain JC1

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction