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9vyf

Cyanopodophage Pan3 portal complex

Method: ELECTRON MICROSCOPY D_max: 186.5 Å Quality: GOOD

SAXS Profile

P(r) Distribution

P(r) distribution for 9vyf

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1. Structure Basics

entry_id	9vyf
deposition_date	2025-07-21
title	Cyanopodophage Pan3 portal complex
keywords	Cyanophage, Virus, Portal, VIRAL PROTEIN; VIRAL PROTEIN
method	ELECTRON MICROSCOPY

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	61.08 Å
rg_electron	60.27 Å
i0	8086510000.00
molecular_weight	735500.0 kDa
excluded_volume	910830 Å³
envelope_volume	1402000 Å³
shell_volume	182850 Å³
envelope_diameter	187.5 Å
shell_rg	71.66 Å
envelope_rg	58.07 Å
shape_rg	60.30 Å
total_rg	60.38 Å
total_atoms	51668
n_residues	6525
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	186.5 Å
rg_real	60.55 Å
rg_real_error	1.57 Å
i0_real	8.0860e+09
i0_real_error	1.7160e+08
rg_reciprocal	61.50 Å
i0_reciprocal	8099000000.0000
total_estimate	0.8694
solution_quality	GOOD a GOOD solution
n_peaks	1
r_peak_primary	86.1 Å
skewness	-0.024
kurtosis	-0.561
angular_range	— – 0.1300 Å⁻¹
current_alpha	0.0000
highest_alpha	2087000000.0000
n_real_points	27
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.878; Stabil: 0.994; Sysdev: 1.000; Positv: 1.000; Valcen: 0.940; Smooth: 0.740

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4. Crystallography & Experiment

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5. Entities & Polymer Info (1)

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6. Citations (1)

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7. Files & Curves (10)