9vyi
Cryo-EM structure of bacteriophage P1 baseplate in C1
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9vyi |
| deposition_date | 2025-07-21 |
| title | Cryo-EM structure of bacteriophage P1 baseplate in C1 |
| keywords | baseplate, phage, VIRAL PROTEIN; VIRAL PROTEIN |
| method | ELECTRON MICROSCOPY |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 13.80 Å |
| rg_electron | 12.87 Å |
| i0 | 2038210.00 |
| molecular_weight | 9377.0 kDa |
| excluded_volume | 11526 ų |
| envelope_volume | 12769 ų |
| shell_volume | 9102 ų |
| envelope_diameter | 46.1 Å |
| shell_rg | 17.71 Å |
| envelope_rg | 13.13 Å |
| shape_rg | 12.89 Å |
| total_rg | 13.89 Å |
| total_atoms | 658 |
| n_residues | 93 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 47.6 Å |
| rg_real | 13.81 Å |
| rg_real_error | 0.31 Å |
| i0_real | 2.0380e+06 |
| i0_real_error | 2.4690e+04 |
| rg_reciprocal | 13.81 Å |
| i0_reciprocal | 2038000.0000 |
| total_estimate | 0.8683 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 2 |
| r_peak_primary | 16.2 Å |
| skewness | 0.395 |
| kurtosis | -0.145 |
| angular_range | — – 0.5000 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 308800.0000 |
| n_real_points | 80 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.798; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.931; Smooth: 0.958 |