9vyr
Crystal structure of UPF0235 protein PF1765 from Pyrococcus furiosus at pH 6
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9vyr |
| deposition_date | 2025-07-21 |
| title | Crystal structure of UPF0235 protein PF1765 from Pyrococcus furiosus at pH 6 |
| keywords | PF02594, evolutionary conserved, UNKNOWN FUNCTION; UNKNOWN FUNCTION |
| method | X-RAY DIFFRACTION |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 17.95 Å |
| rg_electron | 17.14 Å |
| i0 | 7502180.00 |
| molecular_weight | 21564.0 kDa |
| excluded_volume | 27820 ų |
| envelope_volume | 31785 ų |
| shell_volume | 15816 ų |
| envelope_diameter | 63.4 Å |
| shell_rg | 22.81 Å |
| envelope_rg | 17.57 Å |
| shape_rg | 17.10 Å |
| total_rg | 18.28 Å |
| total_atoms | 1516 |
| n_residues | 195 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 60.1 Å |
| rg_real | 17.92 Å |
| rg_real_error | 0.39 Å |
| i0_real | 7.5020e+06 |
| i0_real_error | 8.8240e+04 |
| rg_reciprocal | 17.92 Å |
| i0_reciprocal | 7502000.0000 |
| total_estimate | 0.7850 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 3 |
| r_peak_primary | 22.7 Å |
| skewness | 0.351 |
| kurtosis | -0.198 |
| angular_range | — – 0.4450 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 2339000.0000 |
| n_real_points | 75 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.734; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.998; Smooth: 0.000 |