9vyx
Crystal structure of UPF0235 protein PF1765 from Pyrococcus furiosus crystallized with CaCl2 at pH 6
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9vyx |
| deposition_date | 2025-07-21 |
| title | Crystal structure of UPF0235 protein PF1765 from Pyrococcus furiosus crystallized with CaCl2 at pH 6 |
| keywords | PF02594, evolutionary conserved, UNKNOWN FUNCTION; UNKNOWN FUNCTION |
| method | X-RAY DIFFRACTION |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 14.13 Å |
| rg_electron | 12.53 Å |
| i0 | 2147850.00 |
| molecular_weight | 10630.0 kDa |
| excluded_volume | 13691 ų |
| envelope_volume | 15075 ų |
| shell_volume | 10325 ų |
| envelope_diameter | 45.1 Å |
| shell_rg | 18.23 Å |
| envelope_rg | 12.91 Å |
| shape_rg | 12.48 Å |
| total_rg | 14.13 Å |
| total_atoms | 746 |
| n_residues | 96 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 46.3 Å |
| rg_real | 14.02 Å |
| rg_real_error | 0.29 Å |
| i0_real | 2.1480e+06 |
| i0_real_error | 2.3350e+04 |
| rg_reciprocal | 14.03 Å |
| i0_reciprocal | 2148000.0000 |
| total_estimate | 0.8719 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 2 |
| r_peak_primary | 19.3 Å |
| skewness | 0.089 |
| kurtosis | -0.322 |
| angular_range | — – 0.5000 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 392600.0000 |
| n_real_points | 80 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.792; Stabil: 0.999; Sysdev: 1.000; Positv: 1.000; Valcen: 0.998; Smooth: 0.957 |