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9w3l

Cryo-EM structure of GPR151-Nb6 complex

Method: ELECTRON MICROSCOPY D_max: 126.0 Å Quality: REASONABLE

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	9w3l
deposition_date	2025-07-29
title	Cryo-EM structure of GPR151-Nb6 complex
keywords	orphan GPCR, cryo-EM, GPR151, MEMBRANE PROTEIN; MEMBRANE PROTEIN
method	ELECTRON MICROSCOPY

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	32.43 Å
rg_electron	32.32 Å
i0	27031300.00
molecular_weight	42772.0 kDa
excluded_volume	54483 Å³
envelope_volume	73420 Å³
shell_volume	22058 Å³
envelope_diameter	130.6 Å
shell_rg	33.60 Å
envelope_rg	32.93 Å
shape_rg	32.39 Å
total_rg	32.23 Å
total_atoms	3021
n_residues	401
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	126.0 Å
rg_real	33.24 Å
rg_real_error	1.84 Å
i0_real	2.7030e+07
i0_real_error	4.7430e+05
rg_reciprocal	32.90 Å
i0_reciprocal	27020000.0000
total_estimate	0.6638
solution_quality	REASONABLE a REASONABLE solution
n_peaks	1
r_peak_primary	23.1 Å
skewness	0.670
kurtosis	-0.275
angular_range	— – 0.2450 Å⁻¹
current_alpha	0.0000
highest_alpha	5492000.0000
n_real_points	50
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.203; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.054; Smooth: 0.962

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4. Crystallography & Experiment

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5. Entities & Polymer Info (2)

Entity 1 polymer

description	G-protein coupled receptor 151
formula_weight	46708.2 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	A
atom_count	3021

MLAAAFADSNSSSMNVSFAHLHFAGGYLPSDSQDWRTIIPALLVAVCLVGFVGNLCVIGILLHNAWKGKPSMIHSLILNLSLADLLLLLFSAPIRATAYSKSVWDLGWFVCKSSDWFIHTCMAAKSWTIVVVAKVCFMYASDPAKQVSIHNYTIWSVLVAIWTVASLLPLPEWFFSTIRHHEGVEMCLVDVPAVAEEFMAMFGKLYPLLAFGLPLFFASFYYTLMILRLKSVRLLSGSREKDRNLRRITRLVLSIAIISALLWLPEWVAWLWVWHLKAAGPAPPQGFIALSQVLMFSISAANPLIFLVMSEEFREGLKGVWKWMITKKPPTVSESQETPAGNSEGLPDKVPSPESPASIPEKEKPSSPSSGKGKTEKAEIPILPDVEQFWHERDTVPSVQDNDPIPWEHEDQETGEGVK

Source

organism	Homo sapiens
common_name	human
ncbi_taxonomy_id	9606
host_organism	Spodoptera frugiperda

Entity 2 polymer

description	NB6
formula_weight	14057.6 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	B

MQVQLQESGGGLVQAGESLRLSCAASGTIFRLYDMGWYRRAPGKQRELVASITSGGSTKYGDSVKGRFTISRDNAKNTVYLQMSSLKPEDTAVYYCNAEYRTGIWEELLDGWGQGTQVTVSSLEHHH

Source

organism	Spodoptera frugiperda
ncbi_taxonomy_id	7108
host_organism	Spodoptera frugiperda

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6. Citations (1)

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length_a	1.000 Å
length_b	1.000 Å
length_c	1.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	—

space_group	P 1
int_tables_number	1
crystal_system	—

resolution	2.760 Å
resolution_low	— Å
r_factor	—
r_work	—
r_free	—

resolution	2.76 Å
resolution_method	—
num_particles	869552

fit	/app/data/saxs_computation/w3/9w3l/9w3l.fit
pddf	/app/data/pr_computation/w3/9w3l/9w3l.pr.out
profile	/app/data/saxs_computation/w3/9w3l/9w3l.dat

Cryo-EM structure of GPR151-Nb6 complex

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

EM 3D

5. Entities & Polymer Info (2)

Entity 1 polymer

Polymer

Source

Entity 2 polymer

Polymer

Source

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)