9w59
The structure of dUTPase from Methanosarcina mazei
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9w59 |
| deposition_date | 2025-08-01 |
| last_revision | 2026-04-29 |
| title | The structure of dUTPase from Methanosarcina mazei |
| keywords | Archaea; dUTPase; trimeric enzyme; crystal structure; subdomain I; evolutionary divergence, HYDROLASE; HYDROLASE |
| method | X-RAY DIFFRACTION |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 22.49 Å |
| rg_electron | 21.15 Å |
| i0 | 41409100.00 |
| molecular_weight | 51631.0 kDa |
| excluded_volume | 65502 ų |
| envelope_volume | 73721 ų |
| shell_volume | 27775 ų |
| envelope_diameter | 72.4 Å |
| shell_rg | 28.96 Å |
| envelope_rg | 21.38 Å |
| shape_rg | 21.15 Å |
| total_rg | 22.10 Å |
| total_atoms | 3631 |
| n_residues | 465 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 65.9 Å |
| rg_real | 22.30 Å |
| rg_real_error | 0.31 Å |
| i0_real | 4.1410e+07 |
| i0_real_error | 4.8780e+05 |
| rg_reciprocal | 22.34 Å |
| i0_reciprocal | 41410000.0000 |
| total_estimate | 0.8271 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 2 |
| r_peak_primary | 30.9 Å |
| skewness | 0.013 |
| kurtosis | -0.544 |
| angular_range | — – 0.3550 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 18380000.0000 |
| n_real_points | 67 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.928; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.966; Smooth: 0.000 |