Crystal structure of ASFV EP424R

Method: X-RAY DIFFRACTION D_max: 106.8 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	9w69
deposition_date	2025-08-03
last_revision	2025-11-26
title	Crystal structure of ASFV EP424R
keywords	Virus protein, ASFV, EP424R, TRANSFERASE; TRANSFERASE
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	33.25 Å
rg_electron	32.90 Å
i0	121645000.00
molecular_weight	92482.0 kDa
excluded_volume	117710 Å³
envelope_volume	152190 Å³
shell_volume	38923 Å³
envelope_diameter	106.7 Å
shell_rg	39.54 Å
envelope_rg	31.97 Å
shape_rg	32.91 Å
total_rg	33.46 Å
total_atoms	6528
n_residues	792
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	106.8 Å
rg_real	33.25 Å
rg_real_error	0.73 Å
i0_real	1.2160e+08
i0_real_error	1.8890e+06
rg_reciprocal	33.26 Å
i0_reciprocal	121600000.0000
total_estimate	0.8981
solution_quality	GOOD a GOOD solution
n_peaks	1
r_peak_primary	33.4 Å
skewness	0.236
kurtosis	-0.712
angular_range	— – 0.2400 Å⁻¹
current_alpha	0.0000
highest_alpha	22640000.0000
n_real_points	49
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.921; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.963; Smooth: 0.945

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4. Crystallography & Experiment

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5. Entities & Polymer Info (2)

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6. Citations (1)

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length_a	80.254 Å
length_b	57.939 Å
length_c	102.143 Å
angle_alpha	90.00 °
angle_beta	112.16 °
angle_gamma	90.00 °
z_pdb	4

space_group	P 1 21 1
int_tables_number	4
crystal_system	—

resolution	2.790 Å
resolution_low	50.000 Å
r_factor	0.2051
r_work	0.2023
r_free	0.2620

description	Probable methyltransferase EP424R
formula_weight	49653.0 kDa
ec_number	2.1.1.-
src_method	man
entity_count	2

type	polypeptide(L)
strand_id	A,B
atom_count	6749

Crystal structure of ASFV EP424R

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (2)

Entity 1 polymer

Polymer

Source

Entity 2 water

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)

organism	African swine fever virus (isolate Tick/South Africa/Pretoriuskop Pr4/1996)
common_name	ASFV
ncbi_taxonomy_id	561443
host_organism	Escherichia coli

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	221

fit	/app/data/saxs_computation/w6/9w69/9w69.fit
pddf	/app/data/pr_computation/w6/9w69/9w69.pr.out
profile	/app/data/saxs_computation/w6/9w69/9w69.dat