Crystal Structure of NFIB Bound to a Palindromic DNA

entry_id	9w7w
deposition_date	2025-08-07
last_revision	2026-01-07
title	Crystal Structure of NFIB Bound to a Palindromic DNA
keywords	NFIB, Transcription factor, Oncogenic regulation, DNA BINDING PROTEIN; DNA BINDING PROTEIN
method	X-RAY DIFFRACTION

rg_guinier	29.63 Å
rg_electron	27.83 Å
i0	94654700.00
molecular_weight	61672.0 kDa
excluded_volume	70995 ų
envelope_volume	100700 ų
shell_volume	30658 ų
envelope_diameter	92.7 Å
shell_rg	34.66 Å
envelope_rg	27.13 Å
shape_rg	27.78 Å
total_rg	28.56 Å
total_atoms	4234
n_residues	402
n_harmonics	20
q_range	— – 0.5000 Å−1
n_points	101
shell_type	directional
solvent_density	0.3340 e/ų
contrast_shell	0.0300 e/ų
crysol_version	4.1.3

dmax	91.0 Å
rg_real	29.50 Å
rg_real_error	0.55 Å
i0_real	9.4650e+07
i0_real_error	1.2990e+06
rg_reciprocal	29.56 Å
i0_reciprocal	94660000.0000
total_estimate	0.9119
solution_quality	EXCELLENT a EXCELLENT solution
n_peaks	1
r_peak_primary	89.3 Å
skewness	0.070
kurtosis	-0.698
angular_range	— – 0.2650 Å−1
current_alpha	0.0000
highest_alpha	3766000.0000
n_real_points	54
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.965; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 1.000; Smooth: 0.955

Unit Cell

length_a	105.952 Å
length_b	125.551 Å
length_c	68.004 Å
angle_alpha	90.00 °
angle_beta	92.78 °
angle_gamma	90.00 °
z_pdb	8

Symmetry

space_group	C 1 2 1
int_tables_number	5
crystal_system	monoclinic

Refinement

resolution	2.810 Å
resolution_low	31.390 Å
r_factor	0.2499
r_work	0.2464
r_free	0.2927

Diffraction

temperature

100.0 K

Files (7)

• pr_distribution /app/data/pr_computation/w7/9w7w/pr_distribution.json
• pr_output /app/data/pr_computation/w7/9w7w/9w7w.pr.out
• pr_plot /app/data/visualization/pr_computation/w7/9w7w/9w7w_pr_distribution.png
• saxs_curve_dat /app/data/saxs_computation/w7/9w7w/9w7w.dat
• saxs_fit /app/data/saxs_computation/w7/9w7w/9w7w.fit
• saxs_log /app/data/saxs_computation/w7/9w7w/9w7w.log
• saxs_plot /app/data/visualization/saxs_computation/w7/9w7w/9w7w_saxs_profile.png

Curves (3)

fit	/app/data/saxs_computation/w7/9w7w/9w7w.fit
pddf	/app/data/pr_computation/w7/9w7w/9w7w.pr.out
profile	/app/data/saxs_computation/w7/9w7w/9w7w.dat