← Back to search

9wcb

Open state of A8 gpJ 713 central tail fiber with OmpC G17 from E. coli EDL933

Method: ELECTRON MICROSCOPY D_max: 125.7 Å Quality: GOOD

SAXS Profile

P(r) Distribution

▼

1. Structure Basics

entry_id	9wcb
deposition_date	2025-08-16
title	Open state of A8 gpJ 713 central tail fiber with OmpC G17 from E. coli EDL933
keywords	Phage Tail, VIRAL PROTEIN; VIRAL PROTEIN
method	ELECTRON MICROSCOPY

▼

Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

▼

2. SAXS Parameters (CRYSOL)

rg_guinier	36.99 Å
rg_electron	36.97 Å
i0	485402000.00
molecular_weight	171620.0 kDa
excluded_volume	211310 Å³
envelope_volume	269480 Å³
shell_volume	60470 Å³
envelope_diameter	133.1 Å
shell_rg	43.30 Å
envelope_rg	37.22 Å
shape_rg	36.93 Å
total_rg	37.47 Å
total_atoms	12120
n_residues	1560
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

▼

3. P(r) Analysis (GNOM)

dmax	125.7 Å
rg_real	37.09 Å
rg_real_error	0.85 Å
i0_real	4.8540e+08
i0_real_error	8.5980e+06
rg_reciprocal	37.03 Å
i0_reciprocal	485400000.0000
total_estimate	0.8430
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	40.9 Å
skewness	0.544
kurtosis	0.178
angular_range	— – 0.2150 Å⁻¹
current_alpha	0.0000
highest_alpha	101700000.0000
n_real_points	44
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.743; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.989; Smooth: 0.738

▶

4. Crystallography & Experiment

▶

5. Entities & Polymer Info (2)

Entity 1 polymer

description	A8 gpJ 713
formula_weight	47315.7 kDa
src_method	man
entity_count	3

Polymer

type	polypeptide(L)
strand_id	J,F,Z
atom_count	12120

HHHHHHHHAPAAPSRIELTPGYFQITATPHLAVYDPTVQFEFWFSEKQIADIRQVETSTRYLGTALYWIAASINIKPGHDYYFYIRSVNTVGKSAFVEAVGRASDDAEGYLDFFKGKITESHLGKELLEKVELTEDNASRLEEFSKEWKDASDKWNAMWAVKIEQTKDGKHYVAGIGLSMEDTEEGKLSQFLVAANRIAFIDPANGNETPMFVAQGNQIFMNDVFLKRLTAPTITSGGNPPAFSLTPDGKLTAKNADISGSVNANSGTLNNVTINENCQIKGKLSANQIEGDIVKTVSKSFPRTNSYASGTITVRISDDQKFDRQVMIPPVLFRGGKHENFNSNNQQSYWYSTCRLRVTRNGQEIFNQSTTDAQGVFSSVIDMPAGQGTLTLTFTVSSSGANNWTPTTSISDLLVVVMKKSTAGISIS

Source

organism	Escherichia phage Lambda
ncbi_taxonomy_id	2681611
host_organism	Escherichia coli BL21(DE3)

Entity 2 polymer

description	Outer membrane porin C
formula_weight	38476.5 kDa
src_method	man
entity_count	3

Polymer

type	polypeptide(L)
strand_id	A,B,C

AEVYNKDGNKLDLYGKVDGLHYFSDDKSVDGDQTYMRLGFKGETQVTDQLTGYGQWEYQIQGNSAENENNSWTRVAFAGLKFQDVGSFDYGRNYGVVYDVTSWTDVLPEFGGDTYGSDNFMQQRGNGFATYRNTDFFGLVDGLNFAVQYQGKNGSVSGEGMTNNGREALRQNGDGVGGSITYDYEGFGIGAAVSSSKRTDDQNSPLYIGNGDRAETYTGGLKYDANNIYLAAQYTQTYNATRVGSLGWANKAQNFEAVAQYQFDFGLRPSLAYLQSKGKNLGVINGRNYDDEDILKYVDVGATYYFNKNMSTYVDYKINLLDDNQFTRDAGINTDNIVALGLVYQF

Source

organism	Escherichia coli O157:H7 str. EDL933
ncbi_taxonomy_id	155864
host_organism	Escherichia coli BL21(DE3)

▶

6. Citations (1)

▶

length_a	1.000 Å
length_b	1.000 Å
length_c	1.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	—

space_group	P 1
int_tables_number	1
crystal_system	—

resolution	3.89 Å
resolution_method	—
num_particles	168284

fit	/app/data/saxs_computation/wc/9wcb/9wcb.fit
pddf	/app/data/pr_computation/wc/9wcb/9wcb.pr.out
profile	/app/data/saxs_computation/wc/9wcb/9wcb.dat

Open state of A8 gpJ 713 central tail fiber with OmpC G17 from E. coli EDL933

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

EM 3D

5. Entities & Polymer Info (2)

Entity 1 polymer

Polymer

Source

Entity 2 polymer

Polymer

Source

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)