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9wp5

The crystal structure of PDE4D with Pinoresinol Dimethyl Ether

Method: X-RAY DIFFRACTION Dmax: 89.9 Å Quality: EXCELLENT

SAXS Profile

SAXS profile for 9wp5

P(r) Distribution

P(r) distribution for 9wp5

1. Structure Basics

entry_id9wp5
deposition_date2025-09-08
last_revision2026-02-11
titleThe crystal structure of PDE4D with Pinoresinol Dimethyl Ether
keywordsNatural PDE4 inhibitor, HYDROLASE; HYDROLASE
methodX-RAY DIFFRACTION

Download Data

2. SAXS Parameters (CRYSOL)

rg_guinier28.55
rg_electron27.87
i0175410000.00
molecular_weight69989.0 kDa
excluded_volume67552 ų
envelope_volume114220 ų
shell_volume33589 ų
envelope_diameter96.3
shell_rg35.58
envelope_rg27.81
shape_rg27.88
total_rg28.40
total_atoms5286
n_residues646
n_harmonics20
q_range— – 0.5000 −1
n_points101
shell_typedirectional
solvent_density0.3340 e/ų
contrast_shell0.0300 e/ų
crysol_version4.1.3

3. P(r) Analysis (GNOM)

dmax89.9
rg_real28.50
rg_real_error0.57
i0_real1.7540e+08
i0_real_error2.4080e+06
rg_reciprocal28.52
i0_reciprocal175400000.0000
total_estimate0.9010
solution_quality EXCELLENT a EXCELLENT solution
n_peaks2
r_peak_primary32.1
skewness0.267
kurtosis-0.543
angular_range— – 0.2800 −1
current_alpha0.0000
highest_alpha25750000.0000
n_real_points57
gnom_version4.1.3
quality_criteria AN1: 0.000; Oscil: 0.941; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.995; Smooth: 0.891

4. Crystallography & Experiment

5. Entities & Polymer Info (5)

6. Citations (1)

7. Files & Curves (10)