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9x5b

Crystal structure of Fgm3 in complex with PLP and L-Arg

Method: X-RAY DIFFRACTION Dmax: 90.3 Å Quality: GOOD

SAXS Profile

SAXS profile for 9x5b

P(r) Distribution

P(r) distribution for 9x5b
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1. Structure Basics

entry_id9x5b
deposition_date2025-10-13
last_revision2026-05-20
titleCrystal structure of Fgm3 in complex with PLP and L-Arg
keywordsPLP, Retro-aldol-like, Cbeta-Cgamma Bond Cleavage, BIOSYNTHETIC PROTEIN; BIOSYNTHETIC PROTEIN
methodX-RAY DIFFRACTION
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Download Data

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2. SAXS Parameters (CRYSOL)

rg_guinier27.99 Å
rg_electron27.08 Å
i0118461000.00
molecular_weight87711.0 kDa
excluded_volume110420 ų
envelope_volume125000 ų
shell_volume37569 ų
envelope_diameter95.1 Å
shell_rg35.53 Å
envelope_rg27.32 Å
shape_rg27.04 Å
total_rg28.01 Å
total_atoms6192
n_residues788
n_harmonics20
q_range— – 0.5000 Å−1
n_points101
shell_typedirectional
solvent_density0.3340 e/ų
contrast_shell0.0300 e/ų
crysol_version4.1.3
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3. P(r) Analysis (GNOM)

dmax90.3 Å
rg_real27.92 Å
rg_real_error0.51 Å
i0_real1.1850e+08
i0_real_error1.5760e+06
rg_reciprocal27.95 Å
i0_reciprocal118500000.0000
total_estimate0.8942
solution_quality GOOD a GOOD solution
n_peaks2
r_peak_primary31.7 Å
skewness0.315
kurtosis-0.387
angular_range— – 0.2850 Å−1
current_alpha0.0000
highest_alpha77590000.0000
n_real_points58
gnom_version4.1.3
quality_criteria AN1: 0.000; Oscil: 0.880; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 1.000; Smooth: 0.981
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4. Crystallography & Experiment

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5. Entities & Polymer Info (5)

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6. Citations (1)

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7. Files & Curves (10)