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9x5u

Arabidopsis thaliana URE transporter DUR3 - URE bound

Method: ELECTRON MICROSCOPY D_max: 156.5 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	9x5u
deposition_date	2025-10-14
title	Arabidopsis thaliana URE transporter DUR3 - URE bound
keywords	URE transporter, homotetramer, PLANT PROTEIN; PLANT PROTEIN
method	ELECTRON MICROSCOPY

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	50.22 Å
rg_electron	49.50 Å
i0	1000240000.00
molecular_weight	286830.0 kDa
excluded_volume	368700 Å³
envelope_volume	544950 Å³
shell_volume	90201 Å³
envelope_diameter	161.5 Å
shell_rg	56.16 Å
envelope_rg	47.14 Å
shape_rg	49.49 Å
total_rg	49.76 Å
total_atoms	20232
n_residues	2660
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	156.5 Å
rg_real	49.95 Å
rg_real_error	1.16 Å
i0_real	1.0000e+09
i0_real_error	1.6210e+07
rg_reciprocal	50.43 Å
i0_reciprocal	1001000000.0000
total_estimate	0.8633
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	70.7 Å
skewness	-0.055
kurtosis	-0.486
angular_range	— – 0.1550 Å⁻¹
current_alpha	0.0000
highest_alpha	90000000.0000
n_real_points	32
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.798; Stabil: 0.999; Sysdev: 1.000; Positv: 1.000; Valcen: 0.979; Smooth: 0.847

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4. Crystallography & Experiment

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5. Entities & Polymer Info (2)

Entity 1 polymer

description	Urea-proton symporter DUR3
formula_weight	80662.4 kDa
src_method	man
entity_count	4

Polymer

type	polypeptide(L)
strand_id	A,B,C,D
atom_count	20232

MATCPPFDFSTKYYDGDGGCQRQSSFFGGTTVLDQGVGYAVILGFGAFFAVFTSFLVWLEKRYVGARHTSEWFNTAGRNVKTGLIASVIVSQWTWAATILQSSNVAWQYGVSGPFWYASGATIQVLLFGVMAIEIKRKAPNAHTVCEIVKARWGTATHIVFLVFCLATNVVVTAMLLLGGSAVVNALTGVNLYAASFLIPLGVVVYTLAGGLKATFLASYVHSVIVHVALVVFVFLVYTSSKELGSPSVVYDRLKDMVAKSRSCTEPLSHHGQACGPVDGNFRGSYLTMLSSGGAVFGLINIVGNFGTVFVDNGYWVSAIAARPSSTHKGYLLGGLVWFAVPFSLATSLGLGALALDLPISKDEADRGLVPPATAIALMGKSGSLLLLTMLFMAVTSAGSSELIAVSSLFTYDIYRTYINPRATGRQILKISRCAVLGFGCFMGILAVVLNKAGVSLGWMYLAMGVLIGSAVIPIAFMLLWSKANAFGAILGATSGCVFGIITWLTTAKTQYGRVDLDSTGKNGPMLAGNLVAILTGGLIHAVCSLVRPQNYDWSTTREIKVVEAYASGDEDVDVPAEELREEKLRRAKAWIVKWGLVFTILIVVIWPVLSLPARVFSRGYFWFWAIVAIAWGTIGSIVIIGLPLVESWDTIKSVCMGMFTNDRVMKKLDDLNHRLRALTMAVPEAEKIYLLELEKTKKNDEEGVDELTSRGRDYKDDDDKWSHPQFEKGGGGSGGSAWSHPQFEK

Source

organism	Arabidopsis thaliana
common_name	thale cress
ncbi_taxonomy_id	3702
host_organism	Homo sapiens

Entity 2 non-polymer

description	UREA
formula_weight	60.1 kDa
src_method	syn
entity_count	4

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6. Citations (1)

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length_a	1.000 Å
length_b	1.000 Å
length_c	1.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	—

space_group	P 1
int_tables_number	1
crystal_system	—

resolution	3.190 Å
resolution_low	— Å
r_factor	—
r_work	—
r_free	—

resolution	3.19 Å
resolution_method	—
num_particles	174450

fit	/app/data/saxs_computation/x5/9x5u/9x5u.fit
pddf	/app/data/pr_computation/x5/9x5u/9x5u.pr.out
profile	/app/data/saxs_computation/x5/9x5u/9x5u.dat

Arabidopsis thaliana URE transporter DUR3 - URE bound

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

EM 3D

5. Entities & Polymer Info (2)

Entity 1 polymer

Polymer

Source

Entity 2 non-polymer

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)