9y6u
Cryo-EM Structure of Gp77 within the In Vitro Reconstituted RAZR:GP77 Complex
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9y6u |
| deposition_date | 2025-09-09 |
| title | Cryo-EM Structure of Gp77 within the In Vitro Reconstituted RAZR:GP77 Complex |
| keywords | Phage-bacterial defense complex, Abortive infection Ring-Activated Zinc-Finger RNase (RAZR), RNA BINDING PROTEIN; RNA BINDING PROTEIN |
| method | ELECTRON MICROSCOPY |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 68.36 Å |
| rg_electron | 67.68 Å |
| i0 | 1575830000.00 |
| molecular_weight | 336510.0 kDa |
| excluded_volume | 421310 ų |
| envelope_volume | 745270 ų |
| shell_volume | 89388 ų |
| envelope_diameter | 183.5 Å |
| shell_rg | 79.24 Å |
| envelope_rg | 61.28 Å |
| shape_rg | 67.67 Å |
| total_rg | 67.88 Å |
| total_atoms | 47328 |
| n_residues | 3000 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 172.5 Å |
| rg_real | 68.12 Å |
| rg_real_error | 0.90 Å |
| i0_real | 1.5760e+09 |
| i0_real_error | 3.3830e+07 |
| rg_reciprocal | 68.94 Å |
| i0_reciprocal | 1578000000.0000 |
| total_estimate | 0.7620 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 2 |
| r_peak_primary | 120.0 Å |
| skewness | -0.262 |
| kurtosis | -1.072 |
| angular_range | — – 0.1150 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 23660000.0000 |
| n_real_points | 24 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.694; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.821; Smooth: 0.000 |