9ybi
Structure of the CBS pair domain from zebrafish magnesium transporter CNNM2
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9ybi |
| deposition_date | 2025-09-17 |
| last_revision | 2025-09-24 |
| title | Structure of the CBS pair domain from zebrafish magnesium transporter CNNM2 |
| keywords | magnesium transporter, Bateman fold, adenosyl-binding domain, protein-binding domain, TRANSPORT PROTEIN; TRANSPORT PROTEIN |
| method | X-RAY DIFFRACTION |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 22.20 Å |
| rg_electron | 21.01 Å |
| i0 | 16717300.00 |
| molecular_weight | 31895.0 kDa |
| excluded_volume | 40272 ų |
| envelope_volume | 49870 ų |
| shell_volume | 19960 ų |
| envelope_diameter | 79.9 Å |
| shell_rg | 27.37 Å |
| envelope_rg | 20.97 Å |
| shape_rg | 21.01 Å |
| total_rg | 21.90 Å |
| total_atoms | 2243 |
| n_residues | 296 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 77.2 Å |
| rg_real | 22.14 Å |
| rg_real_error | 0.55 Å |
| i0_real | 1.6720e+07 |
| i0_real_error | 2.3210e+05 |
| rg_reciprocal | 22.15 Å |
| i0_reciprocal | 16720000.0000 |
| total_estimate | 0.8690 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 2 |
| r_peak_primary | 24.2 Å |
| skewness | 0.194 |
| kurtosis | -0.464 |
| angular_range | — – 0.3600 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 5505000.0000 |
| n_real_points | 68 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.785; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.941; Smooth: 0.995 |