9yi9
Cryo-EM structure of yeast Mgm101 in the lock-washer apo state
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9yi9 |
| deposition_date | 2025-10-01 |
| title | Cryo-EM structure of yeast Mgm101 in the lock-washer apo state |
| keywords | Single strand annealing protein, SSAP, annealase, DNA BINDING PROTEIN; DNA BINDING PROTEIN |
| method | ELECTRON MICROSCOPY |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 65.89 Å |
| rg_electron | 65.88 Å |
| i0 | 1725740000.00 |
| molecular_weight | 369360.0 kDa |
| excluded_volume | 469440 ų |
| envelope_volume | 792770 ų |
| shell_volume | 95058 ų |
| envelope_diameter | 181.8 Å |
| shell_rg | 77.69 Å |
| envelope_rg | 62.23 Å |
| shape_rg | 65.87 Å |
| total_rg | 66.13 Å |
| total_atoms | 26030 |
| n_residues | 3224 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 173.0 Å |
| rg_real | 65.54 Å |
| rg_real_error | 0.97 Å |
| i0_real | 1.7260e+09 |
| i0_real_error | 3.3240e+07 |
| rg_reciprocal | 66.10 Å |
| i0_reciprocal | 1727000000.0000 |
| total_estimate | 0.8287 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 2 |
| r_peak_primary | 108.1 Å |
| skewness | -0.114 |
| kurtosis | -0.950 |
| angular_range | — – 0.1200 Å−1 |
| current_alpha | 0.0002 |
| highest_alpha | 76400000.0000 |
| n_real_points | 25 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.950; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.919; Smooth: 0.000 |